Table 3

Haplotypes at the alcohol dehydrogenase (Adh1), stearoyl-ACP-desaturase and acetyl-CoA C-acyltransferase loci Adh1 haplotypes are based on concatenation of all three segments of Adh1 sequenced

Adh1


SNP Position in AF123535 and genotype


Haplotype

Frequency

16920

16933

16935

16951

16978

17873

17880

17904

18071

–072

21129

29729

–730

21178

21179

21180

21181

–185

21199

–532

21359

21513

–514

21576

21649

–50

21650

–736

21737


1

0.031

G

G

A

A

C

C

A

C

-

G

I

C

G

C

-

-

T

T

C

I

-

G

2

0.031

A

T

G

G

T

C

A

C

-

G

I

C

G

C

-

-

T

T

C

I

-

G

3

0.125

A

T

G

G

T

C

G

T

-

T

-

T

T

G

I

I

C

-

T

-

-

-

4

0.250

A

T

G

G

T

C

G

T

-

T

-

T

T

G

I

I

C

-

T

-

I

C

5

0.250

A

T

G

G

T

C

G

T

-

T

-

T

T

G

I

I

T

-

T

-

-

-

6

0.312

A

T

G

G

T

G

G

T

I

T

-

T

T

G

I

I

C

I

T

-

-

-


Stearoyl-ACP-desaturase


SNP Position in GenBank accesion AF498430 and genotype


Haplotype

Frequency

71

82

86

87

153

156

171

190–194

200


1

0.222

A

A

T

A

C

G

A

-

T

2

0.222

G

A

T

A

C

A

A

I

C

3

0.055

G

A

T

A

C

A

A

I

T

4

0.500

G

C

A

T

T

A

C

-

T


Acetyl-CoA C-acyltransferase


SNP Position in GenBank accesion AF498472 and genotype


Haplotype

Frequency

38

73

100

111

143

161

239

245

247

250

251

257

266

270

279

290

295

330–391

449


1

0.030

C

C

A

G

C

G

A

C

G

C

G

C

T

A

T

T

A

-

T

2

0.470

C

T

T

G

C

C

A

C

C

T

G

C

A

A

T

C

A

-

C

3

0.230

C

T

T

G

T

C

A

C

G

T

G

C

A

A

T

C

A

-

C

4

0.260

T

T

A

T

C

G

G

T

C

C

A

T

A

C

C

C

T

I

C


Allelic sites at polymorphic sites are shown, together with their nucleotide positions. The insertion – deletion is represented as I. Missing data are denoted "?". Promoter region is separated from the rest of the gene by "^" (Adh1 only).

Ching et al. BMC Genetics 2002 3:19   doi:10.1186/1471-2156-3-19

Open Data