Open Access Highly Accessed Research article

Genome-wide DNA polymorphisms in two cultivars of mei (Prunus mume sieb. et zucc.)

Lidan Sun1, Qixiang Zhang1*, Zongda Xu1, Weiru Yang1, Yu Guo2, Jiuxing Lu1, Huitang Pan1, Tangren Cheng1 and Ming Cai1

Author Affiliations

1 Beijing Key Laboratory of Ornamental Plants Germplasm Innovation and Molecular Breeding, National Engineering Research Center for Floriculture, College of Landscape Architecture, Beijing Forestry University, 100083 Beijing, P.R. China

2 BGI-Shenzhen, 518083 Shenzhen, P.R. China

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BMC Genetics 2013, 14:98  doi:10.1186/1471-2156-14-98

Published: 6 October 2013

Additional files

Additional file 1:

Detailed information of 200,627 polymorphic SNPs identified between ‘Fenban’ and ‘Kouzi Yudie’.

Format: XLSX Size: 8.7MB Download file

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Additional file 2:

Detailed information of 4,900 polymorphic InDels detected between ‘Fenban’ and ‘Kouzi Yudie’.

Format: XLS Size: 5.5MB Download file

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Additional file 3:

Detailed information of 7,063 polymorphic SSRs found between ‘Fenban’ and ‘Kouzi Yudie’.

Format: XLS Size: 7.5MB Download file

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Additional file 4:

Functional annotation of 9,557 genes containing polymorphic markers in mei.

Format: XLS Size: 1.6MB Download file

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Additional file 5:

Characteristics of 670 polymorphic SNP probe loci developed in ‘Fenban’ and ‘Kouzi Yudie’.

Format: XLS Size: 297KB Download file

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Additional file 6:

Polymorphisms of 599 SNP markers based on 23 mei genotypes and 1 plum genotype.

Format: XLS Size: 106KB Download file

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Additional file 7:

Amplifications of polymorphic InDel primers labeled by FAM fluorescent dyes indicated the long InDels compared with the expected sizes. Panels indicated data from ‘Fenban’ (FB) and ‘Kouzi Yudie’ (KZYD) and their F1 hybrids (HB): (A) and (B) loci heterozygosity in the ‘Fenban’, two alleles; (C) loci heterozygosity in the ‘Kouzi Yudie’, two alleles.

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Additional file 8:

Relative frequency for mono-, di-, and trinucleotides of SSR repeat motifs.

Format: XLS Size: 17KB Download file

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Additional file 9:

Examples of amplifications of SSR primers labeled with FAM fluorescent dyes. Panels indicated data from ‘Fenban’ (FB) and ‘Kouzi Yudie’ (KZYD) and their F1 hybrids (HB): (A) locus heterozygosities in the ‘Fenban’, two alleles; (B) locus heterozygosities in the ‘Kouzi Yudie’, two alleles; (C) locus heterozygosities in parental lines, two alleles; (D) locus heterozygosities in parental lines, three alleles; (E) locus heterozygosities in parental lines, four alleles; (F) locus homozygosity in parental lines.

Format: DOC Size: 518KB Download file

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