Table 1

Genetic structure of all investigated candidate gene fragments of the phenylpropanoid pathway after resequencing and aligning of 16 barley reference genotypes
Gene fragment Fragment size [bp] Exon size [bp] Intron size [bp] 3' UTR [bp] No. of InDels No. of SNPs SNP frequency per kb
PAL_1 604 604 - - 0 5 8.3
PAL_2 595 595 - - 0 35 58.8
C4H_1 495 46 - 449 0 4 8.1
C4H_4 681 681 - - 0 2 2.9
CHS_1 252 252 - - 0 0 0
CHS_2 255 255 - - 0 0 0
CHS_3 369 369 - - 0 0 0
CHS_GM0287 321 235 - 86 0 11 34.3
CHS_GM0290 661 661 - - 0 1 1.5
CHS_GM0293 474 474 - - 0 17 35.9
F3H_1 796 199 597 - 4 48 60.4
F3H_GM022 544 389 109 46 2 3 5.5
DFR_1 618 428 105 85 0 1 1.6
DFR_3 564 459 105 - 1 3 5.3
DFR_4 915 759 105 51 1 3 3.3

Peukert et al.

Peukert et al. BMC Genetics 2013 14:97   doi:10.1186/1471-2156-14-97

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