Table 1

List of SNPs and contig information for the eight SNP loci that were included in the final analysis in P. damicornis (type β)
Gene SNP name Codon pos Putative role in stress response Reciprocal contig from Taylor-Knowles et al.[[62]]
Beta-hexosaminidase * 171_CT_243 3 Immunity response bu_91849_c19034
Elongation factor 1-alpha (1841) * 1841_GA_723 3 Stress induced apoptosis bu_91849_c14445
Elongation factor 1-alpha (2631) * 2631_GA_1228 1 Stress induced apoptosis bu_91849_lrc55786
Putative un-characterised protein 1.1* 24_CT_847 Un-known bu_91849_c40532
Putative un-characterised protein1.2 24_CA_2390 Un-known bu_91849_c40532
Putative un-characterized protein – mitochondrial 269_GA_818 Un-known bu_91849_c2047
Carbonic anhydrase 1361-TC_426 3 A catalyst for the conversion of carbon dioxide and water into bicarbonate and protons bu_91849_c8064
40S ribosomal protein S3 * 5662_AG_462 3 bu_91849_lrc55459

SNP name constructed in the following manner: (Contig number_SNP nucleotides_position of SNP in trimmed contig). Genes marked with * were amplified also for type α. Reciprocal BLASTs were made to match the contigs containing the SNPs with that of the Taylor-Knowles et al. [62] assembly.

Lundgren et al.

Lundgren et al. BMC Genetics 2013 14:9   doi:10.1186/1471-2156-14-9

Open Data