Table 2

Name, motif, chromosomal location, annealing temperature and associated phenotypic trait of each SSR marker used for this study
Locus Motif Chr* T** Associated phenotypic trait Reference
RM 42 (GA)6 8 65 LAC,CKE,AROMA Bisaws 2004, Shobha Rani 2006
RM 44 (GA)16 8 55 LAC, L/B AC,CKE Biswas 2004, Shobha Rani 2006
RM72 (TAT)5C(ATT)15 8 55 Sheath blight resistance Eizenga et al 2006
RM 80 (CTT)20 8 65 LAC,AROMA Bisaws 2004, Shobha Rani 2006
RM 112 (GAA)5 2 55 GL,GB,G L/B,KL,KB,K L/B Biswas 2004, Shobha Rani 2006, Bai et al., 2010, Lin et al., 2007
RM 149 (AT)10 8 59 HSP 80 gene Breusegem et al 1994, Eizenga et al., 2006
RM 152 (GGC)10 8 60 GL,GB,G L/B,KL,KB,K L/B Biswas 2004, Shobha Rani 2006
RM 182 (AT)16 7 59 Beta amylase gene Chen, 1993
RM207 (GA)25 2 65 GL,AROMA Bisaws 2004, Shobha Rani 2006
RM 210 (GA)23 8 55 AROMA Biswas 2004,
RM 218 (GA)24 3 55 GL Biswas 2004, Shobha Rani 2006
RM 223 (GA)25 8 55 LAC, L/B AC,CKE Biswas 2004, Shobha Rani 2006
RM 250 (CT)17 2 60 GL,GB,G L/B,KL,KB,K L/B Biswas 2004, Shobha Rani 2006
RM 251 (CT)29 3 55 Sheath blight resistance Eizenga et al., 2006, Ahmadi and Fotokian 2011
RM 282 (GA)15 3 59 Blast resistance Eizenga et al., 2006, Ahmadi and Fotokian 2011
RM 284 (GA)8 8 55 LAC, L/B AC,CKE Biswas 2004, Shobha Rani 2006
RM 310 (GT)19 8 55 GL,GB,G L/B,KL,KB,K L/B Biswas 2004, Shobha Rani 2006
RM 337 (CTT)4-19-(CTT)8 8 59 AROMA Biswas 2004, Shobha Rani 2006
RM 339 (CTT)8CCT9CCT)5 8 59 LAC, L/B AC,CKE Biswas 2004, Shobha Rani 2006
RM 341 (CTT)20 2 55 Sheath blight resistance Eizenga et al., 2006
RM 505 (CT)12 7 55 GL,GB,G L/B,KL,KB,K L/B Biswas 2004, Shobha Rani 2006
RM 530 (GA)23 2 59 GL,GB,G L/B,KL,KB,K L/B Biswas 2004, Shobha Rani 2006, Bai et al., 2010, Lin et al., 2007
RM 569 (CT)16 3 59 GL,GB,G L/B,KL,KB,K L/B Biswas 2004, Shobha Rani 2006

Chr - Rice chromosome T - Annealing temperature.

Das et al.

Das et al. BMC Genetics 2013 14:71   doi:10.1186/1471-2156-14-71

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