Table 2

List of genes within the 1 Mb region surrounding the most significant SNP (rs133012258)
Gene Ensembl ID BTA14 coordinates Distance from SNP (kb) Strand HSA8 homology SSA4 homology MMA4 homology Description
U6 ENSBTAG00000043923 25492090:25492184 115.4 + No homologues No homologues No homologues U6 spliceosomal RNA
PENK ENSBTAG00000004924 25218586:25222991 153.8 - ENSG00000181195 ENSSSCG00000006243 ENSMUSG00000045573 Proenkephalin-A
IMPAD1 ENSBTAG00000015637 25544907:25560879 168.1 - ENSG00000104331 ENSSSCG00000006242 ENSMUSG00000066324 Inositolmonophosphatase 3
SDR16C6 ENSBTAG00000040321 25153583:25179651 197.2 - No homologues No homologues ENSMUSG00000071019 Short-chain dehydrogenase/reductase family 16C member 6
SDR16C5 (RDHE2) ENSBTAG00000018570 25105062:25117554 259.3 - ENSG00000170786 ENSSSCG00000006245 ENSMUSG00000028236 Epidermal retinol dehydrogenase 2
Unknown ENSBTAG00000039031 25067486:25067823 309.0 - No homologues No homologues No homologues Uncharacterizedprotein
CHCHD7 ENSBTAG00000033284 25052885:25058779 318.0 + ENSG00000170791 ENSSSCG00000006246 ENSMUSG00000042198 Coiled-coil-helix-coiled-coil-helix domain-containing protein 7
PLAG1 ENSBTAG00000004022 25007291:25009296 367.5 - ENSG00000181690 ENSSSCG00000006247 ENSMUSG00000003282 Pleiomorphic adenoma gene 1
MOS ENSBTAG00000019145 24975950:24976948 399.9 - ENSG00000172680 ENSSSCG00000006248 ENSMUSG00000078365 V-mosMoloneymurine sarcoma viral oncogenehomolog
U1 ENSBTAG00000028889 24970516:24970679 406.1 + No homologues No homologues No homologues U1 spliceosomal RNA
RPS20 ENSBTAG00000019147 24955079:24956324 420.5 - ENSG00000008988 ENSSSCG00000006249 ENSMUSG00000028234 40S ribosomalprotein S20
snoU54 ENSBTAG00000045097 24955769:24955835 421.0 - No homologues No homologues No homologues Small nucleolar RNA U54
LYN ENSBTAG00000020034 24847257:24920713 456.1 + ENSG00000254087 ENSSSCG00000006250 ENSMUSG00000042228 Tyrosine-proteinkinaseLyn

Utsunomiya et al.

Utsunomiya et al. BMC Genetics 2013 14:52   doi:10.1186/1471-2156-14-52

Open Data