Table 8

Results for the real data obtained with EBLASSO-NE, EBLASSO-NEG, LASSO and HyperLasso
Marker/Marker paira IDs Position (Chr,cM) EBLASSO-NE<a onClick="popup('http://www.biomedcentral.com/1471-2156/14/5/mathml/M94','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2156/14/5/mathml/M94">View MathML</a> EBLASSO-NEG<a onClick="popup('http://www.biomedcentral.com/1471-2156/14/5/mathml/M95','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2156/14/5/mathml/M95">View MathML</a> LASSO<a onClick="popup('http://www.biomedcentral.com/1471-2156/14/5/mathml/M96','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2156/14/5/mathml/M96">View MathML</a> HyperLasso<a onClick="popup('http://www.biomedcentral.com/1471-2156/14/5/mathml/M97','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2156/14/5/mathml/M97">View MathML</a>
D1mit334d (1,49.2) −0.15(0.28) −0.37(0.19) −0.80(0.18)
D3mit217d (3,43.7) −0.20(0.30) −0.62(0.13) −0.42(0.20)
D4mit214d (4,21.9) −0.24(0.30) −0.46(0.16) −0.81(0.20)
D6mit261d (6,29.5) −0.18(0.29) −0.42(0.12) −0.56(0.15) −0.78(0.18)
D9mit270d (9,41.5) −0.25(0.31) −0.72(0.13) −0.39(0.23) −0.57(0.24)
D9mit182 (9,53.6) −0.25(0.32) −0.51(0.20) −0.80(0.26)
D13mit228d (13,45.9) −0.12(0.27)c −0.40(0.12)c 0.38(0.20) 0.91(0.19)
(D1mit19;D17mit176) (1,37.2;17,12.0) 0.32(0.37) 0.60(0.19) 0.89(0.24) 0.92(0.30)
(D4mit31d;Dxmit208) (4,50.3;20,18.6) 0.19(0.33) 0.72(0.18) 0.71(0.23) 0.69(0.29)
(D7mit246;D11mit242) (7,12.0;11,31.9) 0.20(0.33) 0.48(0.16) 0.71(0.25)

aPaired markers in parenthesis are markers involved in an epistatic effect. Only effects detected by at least three of the four algorithms are shown. All effects listed have a p-value ≤ 0.05.

bParameters are λ = 0.4 for EBLASSO-NE, (a, b) = (0.01, 0.5) for EBLASSO-NEG, λ = 0.0715 for LASSO and (a,α) = (0.1, 0.01) for HyperLasso. The estimated marker effect is denoted by <a onClick="popup('http://www.biomedcentral.com/1471-2156/14/5/mathml/M98','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2156/14/5/mathml/M98">View MathML</a> and the standard deviation is denoted by <a onClick="popup('http://www.biomedcentral.com/1471-2156/14/5/mathml/M99','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2156/14/5/mathml/M99">View MathML</a>.

cThe estimated marker effect was obtained from a neighboring marker D13mit35 (59.0 cM).

dMarkers identified previously by Masinde et al.[41].

Huang et al.

Huang et al. BMC Genetics 2013 14:5   doi:10.1186/1471-2156-14-5

Open Data