Table 9

SNPs associated with fat percenta
SNP Gene Least-squares means (SEM) Linear Dominance
0 1 2 Effect P value Q value P value Q value
rs109621328 CD14 0.177 (0.051) 0.016 (0.015) 0.029 (0.006) −0.010 0.4151 0.1531 0.0033 0.1760
rs133747802 CD2 0.009 (0.010) 0.037 (0.017) 0.037 (0.008) 0.014 0.0348 0.0870 0.9223 0.9719
rs134432442 CPSF1 0.207 (0.019) 0.105 (0.008) −0.025 (0.006) −0.123 0.0001 0.0018 0.2690 0.4658
rs110270752 DEPDC7 −0.003 (0.023) 0.007 (0.010) 0.046 (0.007) 0.033 0.0004 0.0040 0.3477 0.4920
rs135071345 FAM5C 0.039 (0.036) 0.001 (0.011) 0.042 (0.007) 0.030 0.0053 0.0285 0.0616 0.4480
rs43079452 HSD17B3 0.040 (0.040) 0.055 (0.011) 0.023 (0.007) −0.025 0.0208 0.0693 0.4153 0.9719
HSP70C895D HSP70 0.020 (0.019) 0.051 (0.009) 0.020 (0.008) −0.014 0.1009 0.1185 0.0174 0.3413
rs109761676 MS4A8B 0.036 (0.021) 0.012 (0.009) 0.051 (0.008) 0.023 0.0116 0.0464 0.0256 0.3413
rs134264563 OCLN 0.050 (0.019) 0.038 (0.009) 0.019 (0.008) −0.017 0.0468 0.0968 0.5628 0.9719
rs41912290 SREBF1 0.053 (0.012) 0.035 (0.009) 0.012 (0.009) −0.021 0.0057 0.0285 0.8490 0.5196
rs110805802 TDRKH 0.028 (0.041) 0.007 (0.012) 0.038 (0.007) 0.023 0.0484 0.0968 0.9191 0.9719
rs132789482 TSHB 0.007 (0.037) 0.007 (0.014) 0.040 (0.008) 0.014 0.0265 0.0757 0.6093 0.9719
rs137248155 VCAN −0.011 (0.018) 0.040 (0.009) 0.032 (0.008) 0.010 0.1928 0.1441 0.0249 0.3413

aSingle nucleotide polymorphism represented as the rs number given by the National Center for Biotechnology Information database SNP. For entries not beginning with rs, the abbreviation given by previous researchers was used.

Cochran et al.

Cochran et al. BMC Genetics 2013 14:49   doi:10.1186/1471-2156-14-49

Open Data