Table 3

SNPs associated with heifer conception ratea
SNP Gene Least-squares means (SEM) Linear Dominance
0 1 2 Effect P value Q value P value Q value
rs133700190 AP3B1 3.74 (1.59) 2.72 (0.63) 1.24 (0.46) −1.38 0.0204 0.1290 0.8236 0.9592
rs41766835 APBB1 2.37 (1.40) 2.49 (0.61) 1.13 (0.44) −1.02 0.0288 0.1410 0.4152 0.9592
rs110541595 ARL6IP1 1.28 (0.87) 3.36 (0.53) 0.50 (0.59) −0.85 0.0977 0.2380 0.0010 0.0713
rs135390325 C1QB 2.37 (1.40) 2.49 (0.61) 1.13 (0.44) 1.87 0.0224 0.1290 0.7779 0.9592
rs135744058 CACNA1D 2.00 (1.30) 3.42 (0.56) 0.95 (0.49) −1.51 0.0041 0.0519 0.0229 0.5439
rs109621328 CD14 12.97 (3.16) 2.34 (0.95) 1.65 (0.41) −2.05 0.0192 0.1290 0.0068 0.2153
rs134432442 CPSF1 −0.61 (1.44) 1.18 (0.61) 2.35 (0.48) 1.31 0.0212 0.1290 0.7404 0.9592
rs133449166 CSNK1E 2.82 (0.82) 2.15 (0.53) 0.86 (0.59) −1.03 0.0321 0.1410 0.6649 0.9592
rs110270752 DEPDC7 −1.71 (1.44) 0.64 (0.65) 2.66 (0.47) 2.10 0.0003 0.0095 0.8625 0.9592
rs109503725 DSC2 0.88 (0.67) 1.76 (0.51) 2.79 (0.66) 0.95 0.0386 0.1438 0.9054 0.9592
rs133175991 DZIP3 6.52 (1.77) 1.76 (0.63) 1.44 (0.45) −1.18 0.0556 0.1677 0.0435 0.6897
rs43745234 FSHR −0.38 (1.14) 1.52 (0.53) 2.53 (0.51) 1.27 0.0149 0.1290 0.5717 0.9592
rs109262355 FYB 1.17 (0.87) 0.94 (0.53) 2.77 (0.55) 1.04 0.0302 0.1410 01484 0.7832
rs42339105 GOLGA4 −17.26 (5.65) 1.73 (0.87) 1.78 (0.40) 0.95 0.3028 0.3760 0.0015 0.0713
rs109516714 GPLD1 0.42 (0.85) 1.63 (0.53) 2.52 (0.59) 1.02 0.0369 0.1438 0.8243 0.9592
rs110828053 HSD17B7 1.74 (1.64) 3.15 (0.62) 1.17 (0.44) −1.27 0.0334 0.1410 0.1038 0.6897
rs111015912 LDB3 4.41 (1.57) 2.72 (0.59) 1.16 (0.46) −1.59 0.0067 0.0707 0.9491 0.9592
rs109761676 MS4A8B −0.58 (1.29) 0.94 (0.55) 2.95 (0.50) 1.88 0.0006 0.0127 0.7764 0.9592
rs133497176 NFKBIL1 −1.09 (2.07) 0.82 (0.74) 2.04 (0.42) 1.35 0.0474 0.1580 0.7885 0.9592
rs111027720 PARM1 3.78 (0.72) 2.19 (0.52) −0.28 (0.62) −2.06 <0.0001 0.0057 0.5129 0.9592
rs110805802 TDRKH −6.06 (2.48) 0.90 (0.77) 2.53 (0.44) 2.42 0.0010 0.0158 0.0673 0.6897
rs110883602 ZP2 0.48 (0.81) 1.76 (0.61) 2.45 (0.59) 0.94 0.0433 0.1524 0.6904 0.9592

aSingle nucleotide polymorphism represented as the rs number given by the National Center for Biotechnology Information database SNP.

Cochran et al.

Cochran et al. BMC Genetics 2013 14:49   doi:10.1186/1471-2156-14-49

Open Data