Table 11

SNPs associated with protein percenta
SNP Gene Least-squares means (SEM) Linear Dominance
0 1 2 Effect P value Q value P value Q value
rs109967779 ACAT2 0.018 (0.006) 0.016 (0.004) 0.006 (0.004) −0.007 0.0495 0.1650 0.3982 0.3071
rs110217852 BSP3 −0.005 (0.008) 0.009 (0.004) 0.020 (0.003) 0.022 0.0012 0.0222 0.7556 0.3129
rs109332658 C7H19orf60 0.005 (0.009) 0.009 (0.004) 0.018 (0.003) 0.008 0.0442 0.1628 0.6785 0.3129
rs135744058 CACNA1D 0.012 (0.010) 0.020 (0.004) 0.007 (0.003) −0.008 0.0411 0.1628 0.0915 0.3040
rs109447102 CCDC86 0.005 (0.012) 0.006 (0.005) 0.017 (0.003) 0.009 0.0322 0.1507 0.5579 0.3129
rs134432442 CPSF1 0.048 (0.010) 0.027 (0.004) 0.001 (0.003) −0.025 <0.0001 0.0063 0.7109 0.3129
rs110270752 DEPDC7 −0.013 (0.010) 0.012 (0.004) 0.015 (0.003) 0.009 0.0323 0.1507 0.1169 0.3040
rs109561866 DYRK3 −0.014 (0.023) 0.002 (0.005) 0.016 (0.003) 0.013 0.0143 0.1001 0.9134 0.3215
rs133175991 DZIP3 0.040 (0.013) 0.018 (0.005) 0.010 (0.003) −0.011 0.0201 0.1109 0.4166 0.3071
rs135071345 FAM5C 0.007 (0.016) −0.002 (0.005) 0.018 (0.003) 0.016 0.0006 0.0210 0.1168 0.3040
rs109137982 FCER1G −0.001 (0.033) −0.002 (0.006) 0.016 (0.003) 0.016 0.0056 0.0490 0.6054 0.3129
rs109247499 FST 0.022 (0.005) 0.011 (0.004) 0.006 (0.005) −0.008 0.0163 0.1037 0.4741 0.3129
rs41893756 FUT1 −0.010 (0.010) 0.007 (0.005) 0.017 (0.003) 0.012 0.0046 0.0460 0.6355 0.3129
rs109262355 FYB 0.009 (0.006) 0.007 (0.004) 0.020 (0.004) 0.007 0.0423 0.1628 0.1740 0.3040
rs43079452 HSD17B3 −0.008 (0.017) 0.021 (0.005) 0.011 (0.003) −0.005 0.2902 0.4731 0.0488 0.3040
HSP70C895D HSPA1A 0.019 (0.008) 0.023 (0.004) 0.005 (0.003) −0.012 0.0016 0.0222 0.0534 0.3040
rs109761676 MS4A8B 0.001 (0.009) 0.005 (0.004) 0.021 (0.004) 0.013 0.0014 0.0222 0.3892 0.3071
rs111027720 PARM1 0.023 (0.005) 0.013 (0.003) 0.002 (0.004) −0.010 0.0019 0.0222 0.8492 0.3129
rs109629628 PMM2 0.029 (0.007) 0.011 (0.004) 0.009 (0.004) −0.008 0.0206 0.1109 0.1396 0.3040
rs43572154 ROR2 0.000 (0.018) 0.005 (0.005) 0.016 (0.003) 0.010 0.0481 0.1650 0.8169 0.3129
rs41912290 SREBF1 0.019 (0.006) 0.015 (0.004) 0.006 (0.004) −0.007 0.0378 0.1628 0.6750 0.3129
rs110805802 TDRKH −0.001 (0.017) 0.001 (0.005) 0.017 (0.003) 0.014 0.0064 0.0498 0.5183 0.3129

aSingle nucleotide polymorphism represented as the rs number given by the National Center for Biotechnology Information database SNP. For entries not beginning with rs, the abbreviation given by previous researchers was used.

Cochran et al.

Cochran et al. BMC Genetics 2013 14:49   doi:10.1186/1471-2156-14-49

Open Data