Figure 3.

Expected haplotype distributions visualization. Expected haplotype frequencies <a onClick="popup('http://www.biomedcentral.com/1471-2156/14/48/mathml/M183','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2156/14/48/mathml/M183">View MathML</a> are shown for the simulated use case detailed in Additional file 1, for the two phenotypic groups: A) tall progeny, B) short progeny. The variance <a onClick="popup('http://www.biomedcentral.com/1471-2156/14/48/mathml/M184','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2156/14/48/mathml/M184">View MathML</a> due to uncertainty in crossover locations is shown as shaded regions. Clear distortion is visible near marker 30 (marked by the dashed rectangle), evident from under-representation of haplotype combinations involving paternal haplotype H2 in the short progeny (green and yellow lines in B).

Utro et al. BMC Genetics 2013 14:48   doi:10.1186/1471-2156-14-48
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