Expected haplotype distributions visualization. Expected haplotype frequencies are shown for the simulated use case detailed in Additional file 1, for the two phenotypic groups: A) tall progeny, B) short progeny. The variance due to uncertainty in crossover locations is shown as shaded regions. Clear distortion is visible near marker 30 (marked by the dashed rectangle), evident from under-representation of haplotype combinations involving paternal haplotype H2 in the short progeny (green and yellow lines in B).
Utro et al. BMC Genetics 2013 14:48 doi:10.1186/1471-2156-14-48