Table 1 |
||||
Number of candidate and final SNPs selected through the Common SNP and Highest 1% SNP strategies | ||||
Candidate SNPs | Final Model SNPs | % dEBV variance^{(1)} | Permutation R^{2(2)} | |
Common SNP | 162 | 19 | 50.59% | 0.00 ± 0.02 |
Highest 1% SNP | 70 | 21 | 53.27% | 0.00 ± 0.02 |
^{1}dEBV deregressed estimated breeding value variance explained by the final fitting of SNPs. The % dEBV variance is the model R^{2} from the final analysis which fits all SNPs as fixed effects into a regression analysis.
^{2} Permutation R^{2}: average values and standard deviations for R^{2} from 1,000 permutation tests.
Mokry et al.
Mokry et al. BMC Genetics 2013 14:47 doi:10.1186/1471-2156-14-47