Table 1

Number of candidate and final SNPs selected through the Common SNP and Highest 1% SNP strategies
Candidate SNPs Final Model SNPs % dEBV variance(1) Permutation R2(2)
Common SNP 162 19 50.59% 0.00 ± 0.02
Highest 1% SNP 70 21 53.27% 0.00 ± 0.02

1dEBV deregressed estimated breeding value variance explained by the final fitting of SNPs. The % dEBV variance is the model R2 from the final analysis which fits all SNPs as fixed effects into a regression analysis.

2 Permutation R2: average values and standard deviations for R2 from 1,000 permutation tests.

Mokry et al.

Mokry et al. BMC Genetics 2013 14:47   doi:10.1186/1471-2156-14-47

Open Data