|Number of candidate and final SNPs selected through the Common SNP and Highest 1% SNP strategies|
|Candidate SNPs||Final Model SNPs||% dEBV variance(1)||Permutation R2(2)|
|Common SNP||162||19||50.59%||0.00 ± 0.02|
|Highest 1% SNP||70||21||53.27%||0.00 ± 0.02|
1dEBV deregressed estimated breeding value variance explained by the final fitting of SNPs. The % dEBV variance is the model R2 from the final analysis which fits all SNPs as fixed effects into a regression analysis.
2 Permutation R2: average values and standard deviations for R2 from 1,000 permutation tests.
Mokry et al.
Mokry et al. BMC Genetics 2013 14:47 doi:10.1186/1471-2156-14-47