|Summary table for CODEML|
|Locus||Model (ref)||2(Lb-La)||p||Positively selected codons|
|BLB1125||M1a - M2a||34.48||<0.001||x||x||x||x|
|M7 - M8||35.56||<0.001||x||x||x||x|
|BLB2125||M1a - M2a||22.90||<0.001||x||x||x||x|
|M7 - M8||23.02||<0.001||x||x||x||x||x|
|BLB2251||M1a - M2a||27.08||<0.001||x||x||x||x|
|M7 - M8||27.12||<0.001||x||x||x||x||x||x|
|BLB1&2125||M1a - M2a||45.40||<0.001||x||x||x||x||x|
|M7 - M8||48.38||<0.001||x||x||x||x||x|
|Dist. to Tong PBR||0||1||0||0||1||0|
Two model comparisons were conducted; each comparison includes a neutral model (M1a, M7) and a model allowing for positive selection (M2a, M8). Significance was assessed by comparing twice the difference in likelihood 2(Lb-La) between the models to a χ2-distribution (df = 2). The models fitting our data best are marked in bold. x marks positively selected codons calculated by Bayes Empirical Bayes (BEB) at the >95% confidence level. Distance (Dist.) to Tong PBR corresponds to the amino acid distance between identified site and the nearest peptide binding position identified by Tong et al. . For parameter estimates see Additional file 4.
Strand et al.
Strand et al. BMC Genetics 2013 14:29 doi:10.1186/1471-2156-14-29