Table 3

Number of recombination events calculated by different methods
Locus No. of sequences RM RDP GENECONV Maxchi Chimera GARD ρ θ ρ/θ
BLB1125 6 4 0 0 2 1 2 5.45 12.26 0.44
BLB2125 7 3 0 0 1 0 1 4.02 7.76 0.52
BLB2251 9 6 0 1 1 1 0 1.37 13.61 0.10
BLB1&2125 12 6 0 0 2 1 1 11.42 9.27 1.23

RM, RDP, GENECONV, Maxchi, Chimaera and number of recombination breakpoints calculated GARD. Recombination rate (ρ), mutation rate (θ) and the ratio (ρ/θ) were calculated using LDhat.

Strand et al.

Strand et al. BMC Genetics 2013 14:29   doi:10.1186/1471-2156-14-29

Open Data