Table 5

List of 58 significant (P <0.01) QTL effects among nine traits and 42 S42ILs
Traita QTL name Line Chr.b Target intro.b(cM) Effect LSMeans S42ILd LSMeans Scarlettd Diffe RP(IL)f(in %) QTL effect in S42 or S42ILg Candidate geneh
TN QTn.S42IL-1H S42IL-101 1H 001.1 - 013.5 N100 2.0 1.6 0.4 22.9
QTn.S42IL-4H S42IL-123 4H 128.9 - 172.3 ALL+N100 1.7 1.4 0.4 26.4* I, V
QTn.S42IL-6H S42IL-148 6H 003.3 - 010.7 N100 2.1 1.6 0.5 30.7*
QTn.S42IL-7H S42IL-135 7H 101.2 - 152.3 N100 2.1 1.6 0.4 25.5
S42IL-136 7H 134.4 - 152.3 N100 2.0 1.6 0.4 22.7
LN QLn.S42IL-2H S42IL-109 2H 064.0 - 110.8 N25 4.2 3.2 0.9 28.3 Eam61, Flt-2L2
QLn.S42IL-4H S42IL-123 4H 128.9 - 172.3 ALL 4.3 3.6 0.8 21.3
S42IL-124 4H 171.3 - 183.5 ALL+N100 4.2 3.6 0.7 19.1 VRN-H23
QLn.S42IL-6H S42IL-148 6H 003.3 - 010.7 N100 4.7 3.9 0.8 21.0
QLn.S42IL-7H.a S42IL-133 7H 017.3 - 051.9 ALL 4.3 3.6 0.7 19.6 VRN-H34
QLn.S42IL-7H.b S42IL-135 7H 101.2 - 152.3 N100 4.6 3.9 0.7 18.8
QLn.S42IL-7H.c S42IL-139 7H 198.7 - 229.7 N25 4.1 3.2 0.9 27.5
LL QLl.S42IL-1H S42IL-143 1H 130.7 - 173.5 ALL+N100+N25 20.3 23.7 −3.4 −14.3* HvFT35
QLl.S42IL-2H S42IL-107 2H 034.3 - 066.8 N100 22.9 25.3 −2.4 −9.3
S42IL-108 2H 034.3 - 104.8 N100 22.8 25.3 −2.5 −9.7
QLl.S42IL-3H.a S42IL-113 3H 204.5 - 239.7 N100 23.0 25.3 −2.3 −9.1 sdw16
QLl.S42IL-3H.b S42IL-115 3H 204.5 - 255.1 N25 25.4 22.1 3.3 15.0 sdw16
QLl.S42IL-4H S42IL-121 4H 074.1 - 119.1 N25 24.7 22.1 2.6 11.8
S42IL-123 4H 128.9 - 172.3 ALL+N25 26.0 23.7 2.3 9.7*
QLl.S42IL-5H S42IL-126 5H 145.6 - 200.1 N25 25.1 22.1 3.1 13.8 ari-e.GP7
QLl.S42IL-6H S42IL-131 6H 140.0 - 180.7 N100 22.9 25.3 −2.4 −9.5 cul28
QLl.S42IL-7H.a S42IL-133 7H 017.3 - 051.9 N100 22.6 25.3 −2.6 −10.4* brh19
S42IL-134 7H 051.9 - 107.4 ALL+N100 21.6 23.7 −2.0 −8.6* brh19
QLl.S42IL-7H.b S42IL-135 7H 101.2 - 152.3 ALL+N25 25.6 23.7 1.9 8.0
S42IL-136 7H 134.4 - 152.3 N25 26.3 22.1 4.2 18.9*
S42IL-137 7H 134.4 - 193.9 ALL+N25 26.1 23.7 2.5 10.4*
QLl.S42IL-7H.c S42IL-138 7H 176.4 - 229.7 ALL+N25 25.6 23.7 1.9 8.1*
HEI QHei.S42IL-1H.a S42IL-102 1H 001.1 - 098.2 ALL 35.3 33.0 2.3 7.0 IV
QHei.S42IL-1H.b S42IL-143 1H 130.7 - 173.5 ALL+N100+N25 27.0 33.0 −6.0 −18.1* I, III, V HvFT35
QHei.S42IL-2H.a S42IL-106 2H 022.4 - 034.3 N25 34.5 30.6 3.9 12.9 V
QHei.S42IL-2H.b S42IL-109 2H 064.0 - 110.8 ALL+N25 35.3 33.0 2.3 6.9 I - V Eam61, Flt-2L2
S42IL-110 2H 102.7 - 104.8 N25 34.3 30.6 3.7 12.1 I, III, IV, V Flt-2L2
QHei.S42IL-3H S42IL-115 3H 204.5 - 255.1 ALL+N25 36.6 33.0 3.6 10.9* I, IV, V sdw16
QHei.S42IL-4H S42IL-121 4H 074.1 - 119.1 ALL+N25 35.4 33.0 2.4 7.3* II, V
S42IL-123 4H 128.9 - 172.3 ALL+N25 35.5 33.0 2.6 7.8* V
QHei.S42IL-5H S42IL-126 5H 145.6 - 200.1 N25 34.6 30.6 4.1 13.3 ari-e.GP7
QHei.S42IL-6H S42IL-148 6H 003.3 - 010.7 ALL 35.4 33.0 2.5 7.5
QHei.S42IL-7H.a S42IL-133 7H 017.3 - 051.9 ALL+N100 30.0 33.0 −3.0 −9.1* brh19
S42IL-134 7H 051.9 - 107.4 N100 30.9 35.4 −4.5 −12.8* I - V brh19
QHei.S42IL-7H.b S42IL-135 7H 101.2 - 152.3 ALL+N25 36.1 33.0 3.2 9.6* I, IV, V
S42IL-136 7H 134.4 - 152.3 ALL+N25 35.7 33.0 2.8 8.4* I, V
S42IL-137 7H 134.4 - 193.9 ALL+N25 37.2 33.0 4.2 12.8* I, II, V
QHei.S42IL-7H.c S42IL-138 7H 176.4 - 229.7 ALL+N25 35.9 33.0 2.9 8.9*
S42IL-139 7H 198.7 - 229.7 N25 34.5 30.6 3.9 12.9
SDW QSdw.S42IL-3H S42IL-115 3H 204.5 - 255.1 N25 104.1 65.8 38.3 58.2 I
QSdw.S42IL-4H S42IL-121 4H 074.1 - 119.1 N25 100.7 65.8 34.9 53.0 I, VI
QSdw.S42IL-7H S42IL-136 7H 134.4 - 152.3 N25 101.1 65.8 35.3 53.6 VI
S42IL-137 7H 134.4 - 193.9 N25 102.0 65.8 36.2 55.0 VI
RL QRl.S42IL-1H.a S42IL-141 1H 094.9 - 127.7 ALL+N100 37.3 33.0 4.3 13.0
QRl.S42IL-1H.b S42IL-143 1H 130.7 - 173.5 ALL+N100 27.9 33.0 −5.1 −15.5*
QRl.S42IL-1H.c S42IL-142 1H 188.5 - 205.1 N25 40.0 33.8 6.2 18.2 VII
QRl.S42IL-2H S42IL-106 2H 022.4 - 034.3 ALL+N100 37.8 33.0 4.8 14.6
S42IL-107 2H 034.3 - 066.8 ALL+N100+N25 39.3 33.0 6.3 19.0*
QRl.S42IL-3H S42IL-113 3H 204.5 - 239.7 N25 40.2 33.8 6.3 18.7 sdw16
QRl.S42IL-4H.a S42IL-121 4H 074.1 - 119.1 N25 41.1 33.8 7.2 21.4*
QRl.S42IL-4H.b S42IL-124 4H 171.3 - 183.5 ALL+N100+N25 38.7 33.0 5.6 17.0*
QRl.S42IL-5H S42IL-126 5H 145.6 - 200.1 N100 25.5 32.2 −6.7 −20.8* ari-e.GP7
QRl.S42IL-6H.a S42IL-148 6H 003.3 - 010.7 ALL+N25 38.1 33.0 5.0 15.2*
QRl.S42IL-6H.b S42IL-128 6H 071.4 - 132.2 ALL+N100+N25 39.9 33.0 6.9 20.9*
S42IL-129 6H 073.9 - 133.5 ALL+N100+N25 38.4 33.0 5.4 16.4*
S42IL-130 6H 098.7 - 180.7 ALL+N100+N25 39.5 33.0 6.5 19.7*
QRl.S42IL-7H.a S42IL-133 7H 017.3 - 051.9 ALL+N100+N25 27.2 33.0 −5.8 −17.7* brh19
S42IL-134 7H 051.9 - 107.4 ALL 28.1 33.0 −5.0 −15.1 brh19
QRl.S42IL-7H.b S42IL-135 7H 101.2 - 152.3 ALL+N100+N25 41.5 33.0 8.5 25.7*
RDW QRdw.S42IL-1H.a S42IL-102 1H 001.1 - 098.2 ALL+N100 45.1 33.9 11.2 33.0
QRdw.S42IL-1H.b S42IL-143 1H 130.7 - 173.5 N100 31.2 43.5 −12.3 −28.4
QRdw.S42IL-2H S42IL-109 2H 064.0 - 110.8 ALL+N100+N25 48.1 33.9 14.2 41.9*
LRR QLrr.S42IL-2H S42IL-107 2H 034.3 - 066.8 ALL+N100 0.6 0.8 −0.2 −23.7*
QLrr.S42IL-5H S42IL-126 5H 145.6 - 200.1 ALL+N100 0.9 0.8 0.2 24.1* ari-e.GP7
QLrr.S42IL-6H S42IL-128 6H 071.4 - 132.2 ALL+N100 0.6 0.8 −0.2 −20.9*
QLrr.S42IL-7H S42IL-135 7H 101.2 - 152.3 N100 0.7 0.8 −0.2 −21.0
SRR QSrr.S42IL-1H S42IL-143 1H 130.7 - 173.5 ALL+N100+N25 3.9 2.9 1.0 35.1*
QSrr.S42IL-2H S42IL-107 2H 034.3 - 066.8 ALL+N100 3.4 2.9 0.5 16.3
QSrr.S42IL-4H S42IL-123 4H 128.9 - 172.3 N100 3.6 3.0 0.6 18.4*
QSrr.S42IL-5H S42IL-126 5H 145.6 - 200.1 ALL+N100 3.3 2.9 0.4 13.5* ari-e.GP7
QSrr.S42IL-7H S42IL-133 7H 017.3 - 051.9 ALL+N100+N25 3.8 2.9 0.9 30.2*

a Trait abbreviations are given in Table 2.

b Chromosomal location and extent (in centiMorgan) of the target introgression according to Schmalenbach et al. [19].

c Significant (P < 0.01) line effect across treatments (ALL), under high N treatment (N100) or under low N treatment (N25), determined by the Dunnett test.

d Least squares means of the S42IL and 'Scarlett', respectively. If the S42IL showed a significant association across treatments, the LSMeans across treatments (ALL) is given. If the S42IL showed a significant association solely in N100 or in N100 and N25, respectively, the LSMeans of N100 is given. If the S42IL showed a significant effect solely under N25, the LSMeans of N25 is given.

e Difference between the LSMeans of the S42IL and the LSMeans of 'Scarlett'.

f Relative trait performance of the S42IL compared to 'Scarlett', calculated as RP(IL) = 100 × [LSMeans(S42IL) – LSMeans(‘Scarlett’)]/LSMeans(‘Scarlett’). Highly significant (P < 0.001) trait associations of a QTL are labelled with an asterisk.

g Corresponding QTL in S42 or S42IL published in: I von Korff et al. [45], II Schmalenbach et al. [14], III Wang et al. [18], IV von Korff et al. [44], V Saal et al. [22], VI Schnaithmann and Pillen [23], VII Naz et al. [16].

h Candidate genes published in: 1 Franckowiak and Konishi 1996, cited in [46], 2 Chen et al. [47], 3 Laurie et al. [49], 4 Yan et al. [48], 5 Faure et al. [58], 6 Laurie et al. [54], 7 Chloupek et al. [56], 8 von Wettstein 1993, cited in [61], 9 Li et al. [57].

Hoffmann et al.

Hoffmann et al. BMC Genetics 2012 13:88   doi:10.1186/1471-2156-13-88

Open Data