Table 1

Number of single nucleotide polymorphisms for each data edit implemented on each density panel
Genotype edit HD Panel Reduced HD Panel Hapmap SNP50 Gautier SNP50
Initial data set 777,962 (891) 48,734 (891) 54008 (533) 58336 (633)
Autosomes only 735,293 (891) 47,270 (891) 51587 (533) 55200 (633)
SNP and animals with >90 % Call Rate 727,559 (867) 46,761 (867) 50824 (530) 44687 (633)
Hardy Weinburg Equilibrium in each breed (pā€‰<ā€‰0.0001) 723,502 (867) 46,379 (867) 50783 (530) 44602 (633)
Monomorphic SNPs removed 665,058 (867) 43,028 (867) 48128 (530) 44160 (633)

The SNP edits that were applied to each dataset detailing the amount of SNPs removed and the number of animals in each dataset is listed in parenthesis.

Purfield et al.

Purfield et al. BMC Genetics 2012 13:70   doi:10.1186/1471-2156-13-70

Open Data