Table 7

Estimated least square means for significant meat quality traits in relation to copy number of the most abundant porcine PRKAG3 gene haplotypes as inferred by Arlequin for the promoter SNPs g.-995A>G and SNPg.-311A>G and non-synonymous SNP I199V locus in the Duroc breed (nā€‰=ā€‰98)
HAP ID Traits P- value Estimated trait mean per haplotype copy
0 1 2
HAP1 (AAI) Freq: 0.19 IMFL% 0.15 1.72 (0.08) 2.01 (0.12) 1.88 (0.32)
IMFS % 0.87 2.12 (0.09) 2.22 (0.14) 2.15 (0.39)
Driploss% 0.04 2.61 (0.13) 2.30 (0.20) 1.24 (0.53)
pHULT 0.13 5.63 (0.01) 5.67 (0.02) 5.67 (0.05)
pHUSM 0.02 5.53 (0.01) 5.54 (0.02) 5.66 (0.04)
pH45LT 0.52 6.57 (0.03) 6.57 (0.04) 6.44 (0.11)
pH45SM 0.66 6.49 (0.03) 6.53 (0.04) 6.58 (0.11)
ECULT 0.06 3.13 (0.10) 3.53 (0.16) 2.62 (0.44)
ECUSM 0.35 3.99 (0.09) 3.77 (0.13) 4.14 (0.36)
L* Minolta 0.32 46.4 (0.36) 45.8 (0.55) 44.3 (1.49)
b* Minolta 0.09 3.73 (0.17) 3.04 (0.25) 2.96 (0.69)
HAP2 (AAV) Freq: 0.28 IMFL% 0.37 1.90 (0.09) 1.76 (0.08) 1.54 (0.30)
IMFS % 0.99 2.17 (0.11) 2.15 (0.10) 2.11 (0.37)
Driploss% 0.62 2.38 (0.15) 2.56 (0.16) 2.16 (0.53)
pHULT 0.51 5.65 (0.01) 5.63 (0.01) 5.68 (0.05)
pHUSM 0.59 5.54 (0.01) 5.53 (0.01) 5.52 (0.04)
pH45LT 0.79 6.55 (0.03) 6.57 (0.03) 6.63 (0.11)
pH45SM 0.08 6.52 (0.03) 6.48 (0.03) 6.71 (0.10)
ECULT 0.93 3.21 (0.12) 3.26 (0.12) 3.34 (0.43)
ECUSM 0.22 3.95 (0.11) 3.96 (0.11) 3.34 (0.34)
L* Minolta 0.53 46.1 (0.42) 46.4 (0.41) 45.1 (1.43)
b* Minolta 0.49 3.32 (0.21) 3.65 (0.19) 3.28 (0.68)
HAP3 (GGV) Freq: 0.28 IMFL% 0.49 1.86 (0.11) 1.81 (0.08) 1.51 (0.27)
IMFS % 0.89 2.17 (0.12) 2.15 (0.10) 2.00 (0.33)
Driploss% 0.24 2.39 (0.17) 2.41 (0.15) 3.25 (0.47)
pHULT 0.21 5.65 (0.01) 5.64 (0.01) 5.57 (0.04)
pHUSM 0.69 5.54 (0.01) 5.53 (0.01) 5.51 (0.04)
pH45LT 0.89 6.56 (0.03) 6.57 (0.03) 6.52 (0.09)
pH45SM 0.82 6.51 (0.03) 6.52 (0.03) 6.46 (0.11)
ECULT 0.90 3.25 (0.13) 3.25 (0.12) 3.07 (0.38)
ECUSM 0.44 4.04 (0.11) 3.84 (0.11) 3.93 (0.31)
L* Minolta 0.99 46.1(0.45) 46.2 (0.40) 46.1 (1.29)
b* Minolta 0.57 3.45 (0.21) 3.46 (0.19) 4.11 (0.60)
HAP4 (GAV) Freq: 0.21 IMFL% 0.06 1.76 (0.08) 1.98 (0.10) 1.28 (0.33)
IMFS % 0.43 2.13 (0.11) 2.25 (0.13) 1.75 (0.41)
Driploss% 0.38 2.35 (0.14) 2.67 (0.18) 2.25 (0.59)
pHULT 0.56 5.65 (0.01) 5.63 (0.02) 5.64 (0.05)
pHUSM 0.87 5.54 (0.01) 5.53 (0.01) 5.52 (0.05)
pH45LT 0.95 6.56 (0.03) 6.57 (0.04) 6.55 (0.12)
pH45SM 0.81 6.52 (0.03) 6.49 (0.04) 6.51 (0.12)
ECULT 0.52 3.31 (0.11) 3.10 (0.15) 3.41 (0.47)
ECUSM 0.11 3.80 (0.09) 4.07 (0.12) 4.49 (0.38)
L* Minolta 0.37 45.8 (0.37) 46.8 (0.49) 47.2 (1.58)
b* Minolta 0.57 3.38 (0.18) 3.69 (0.23) 3.29 (0.75)

SNPs g.-995A>G, .-311A>G and I199V formed the haplotype groups.

P-values significantly different at the nominal level are in bold.

IMF Intramuscular Fat, LT M. Longissimus thoracis et lumborum muscle, SM M. semimembranosus muscle, n number of genotypes.

Ryan et al.

Ryan et al. BMC Genetics 2012 13:66   doi:10.1186/1471-2156-13-66

Open Data