Research article
Nucleotide variability and linkage disequilibrium patterns in the porcine MUC4 gene
- † Equal contributors
1 Key Laboratory for Animal Biotechnology of Jiangxi Province and the Ministry of Agriculture of China, Jiangxi Agricultural University, 330045 Nanchang, China
2 Department of Biology, Nanchang University of Science and Technology, 330038 Nanchang, China
BMC Genetics 2012, 13:57 doi:10.1186/1471-2156-13-57
Published: 13 July 2012Additional files
Additional file 1: Table S1:
Primers for identification of SNP markers in the region of MUC4 gene that were genotyped in outbred populations.
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Additional file 2: Figure S1:
The genomic structure of the porcine MUC4 gene (lower panel) and locations of 53 SNPs covering a 92-kb region around MUC4 (upper and lower panels). Blue boxes indicate exons and thin lines indicate introns. Untranslated regions at 5’ and 3’ end are highlighted in yellow. Exon 2 of MUC4 is a tandem repetitive region in which no SNP was genotyped in this study.
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Additional file 3: Table S2:
Minor allele frequencies and heterozygosities of 90 SNPs identified by sequencing 4 Duroc and 4 Erhualian pigs. The 53 SNPs that were genotyped in the 312 pigs were highlighted in red colors.
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Additional file 4: Table S3:
The measures of fixation index (lower triangle) and average number of pairwise nucleotide differences (upper triangle) between pairs of breeds.
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