Table 6

Results of the association analyses of the SNPs that are contained in the PorcineSNP60 BeadChip and mapped within candidate genes underlying the QTL effects in SSC1, 4, 5, 9 and 14
Gene SNP Minor alelle frequency g (SE) P-value
QTL in SSC1 for SW (Whole population)
PTPRD ASGA0005690 0.27 −0.01 (0.06) 0.988
INRA0005932 0 -- --
QTL in SSC4 for BFT75 (BC1 generation)
AGL ASGA0022526 0.19 1.15 (0.51) 0.025
ASGA0022527 0.04 -- --
ALGA0028692 0.27 0.87 (0.22) 1.8 x 10-4
VCAM1 DIAS0002972 0.18 0.84 (0.39) 0.033
QTL in SSC5 for BFTS (F3 + BC2 generations)
VDR DIAS0001339 0.43 −0.01 (0.07) 0.881
MARC0076697 0 -- --
QTL in SSC9 for SW (F3 + BC2 generations)
FASL DBUN0000737 0.33 −0.03 (0.07) 0.622
H3GA0028097 0 -- --
QTL in SSC14 for BFT75 (BC1)
CYP2E1 UMB10000045 0.14 −0.12 (0.39) 0.755

Fernández et al.

Fernández et al. BMC Genetics 2012 13:41   doi:10.1186/1471-2156-13-41

Open Data