Table 5

Annotated genes within the confidence intervals of the new QTLs identified in the present study according to Gbrowse tool
SSC Position
Linkage (cM) Sscrofa10.2 (Mb) Official gene symbol
1 102-104 232.67-240.39 TYRP1,PTPRD
2 112-117 150.90-158.32 ARHGAP26, NR3C1, LARS, RBM27, POU4F3, SLC6A7, CSF1R, HMGXB3,PPARGC1B, PPP2R2B, DPYSL3, JAKMIP2, FBXO38, HTR4, SH3TC2, AFAP1L1, ARHGEF37, CSNK1A1, PDGFR
4 102-109 129.65-134.38 VCAM1, SLC35A3,AGL, PALMD, DPYD, CNN3, FRRS1, SNX7, PTBP2, ACN9, RNDD3, TMEM56, A4H2R6
5 71-88 69.45-83.72 TEAD4, FOXM1, FKBP4, WASH1,SLC6A3, KDM5A, WNK1, RAD52, ERC1,ADIPOR2, CACNA2D4, ATP6U1E1, BCL2L13, BID, MICAL3, USP18, CPNE8, KIF21A, ABCD2, IRAK4, TMEM117, ANO6, ARID2, SCAF11, SLC38A1, SLC34A4,VDR, TMEM106C, COL2A1, SENP1, LALBA, APLP2, ALDH1L2, TXNRD1
9 106-113 120.96-127.05 NOBOX, TMEM183A,MYOG, MYBPH, CHI3L1, CHIT1, PRRC2C, MYOC, VAMP4, METTL13, PIGC,FASLG, TNFRSF4
11 25-27 26.44-27.89 KBTBD6, MTRF1, PCDH8
13 47-53 83.36-91.03 AMOTL2, ANAPC13, MSL2, PCCB, STAG1, TMEM22,NCK1, RASA2, GRK7, XRN11, CLDN18, ESYT3, CEP70, FAIM, PIK3CB, FOXL2, COPB2, TRPC1, RBP2, RBP1, CLSTN2, TRIM42, SLC25A36, ACPL2, ZBTB38
14 109-113 149.48-153.59 MGMT, GLRX3, PWWP2B, INPP5A, KNDC1, ADAM8, ZNF511,CYP2E1
17 56-61 39.58-42.08 TRIB3, TBC1D20, BD129, BD125, REM1,ID1, BCL2L1, MYLK2, TPX2, TM9SF4, PLAGL2, POFUT1, ASXL1, DNMT3B, MAPRE1, SUN5, BP1F cluster, CDK5RAP1, SNTA1, CBFA2T2

In bold appears the most prominent putative biological candidates.

Fernández et al.

Fern├índez et al. BMC Genetics 2012 13:41   doi:10.1186/1471-2156-13-41

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