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EggLib: processing, analysis and simulation tools for population genetics and genomics

Stéphane De Mita12* and Mathieu Siol34

Author Affiliations

1 Institut de Recherche pour le Développement (IRD), UMR Diversité, Adaptation et Développement des Plantes (DIADE), Montpellier, France

2 Institut National de la Recherche Agronomique (INRA), UMR Interactions Arbres-Microorganismes (IAM), Nancy, France

3 Institut National de la Recherche Agronomique (INRA), UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), Montpellier, France

4 Institut National de la Recherche Agronomique (INRA), UMR Agroécologie, Dijon, France

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BMC Genetics 2012, 13:27  doi:10.1186/1471-2156-13-27

Published: 11 April 2012

Additional files

Additional file 1:

Content of EggLib C++ library and Python package. List of all classes and functions defined in EggLib, and brief description. Function names are followed by brackets. In EggLib, class names are capitalized and function names are not. The class methods are not indicated in this table. For those, consult the online documentation.

Format: PDF Size: 56KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 2:

Available polymorphism statistics. List of statistics returned by diversity analysis methods of the Align and SSR classes. When results are reported as a dictionary, the list of available keys is reported. The file contains, whenever appropriate, a description of the conditions under which the statistics are computed, and bibliographic references.

Format: PDF Size: 89KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data