Additional file 1.

Gentrepid validation gene sets and additional benchmarking results.

Table S1 OMIM phenotype associated genes used as seeds for the seeded mode and as the known disease gene validation set.

Table S2 Genes included in the known validation set.

Table S3 Genes included in the WTCCC validation set.

Table S4 Specificity, Sensitivity and Enrichment ratios for validation sets across all phenotypes.

Table S5 LD versus naïve clustering.

Table S6 Comparison of the number of significant Gentrepid predictions between LD and adjacent gene selection sets.

Table S7 Total numbers of significant predictions across Gentrepid, GRAIL and WebGestalt.

Table S8 Specificity, Sensitivity and Enrichment ratios for WTCCC validation set for Gentrepid, GRAIL and WebGestalt.

Format: DOCX Size: 69KB Download file

Ballouz et al. BMC Genetics 2011 12:98   doi:10.1186/1471-2156-12-98