Table 2

Average Linkage Disequilibrium (r2) between adjacent SNP markers.

POP1 (40 k)

POP2 (800 k)


BTA

Length

(Mb)

Number

of

SNP

Average r2

(SD)

Number

of

SNP

Average r2

(SD)


1

146

2712

0.25(0.25)

47539

0.33(0.30)

2

126

2205

0.25(0.25)

38629

0.33(0.30)

3

116

2060

0.24(0.25)

38824

0.31(0.29)

4

111

2011

0.23(0.24)

37889

0.30(0.28)

5

119

1749

0.24(0.24)

32230

0.32(0.30)

6

112

1962

0.26(0.26)

38405

0.32(0.29)

7

101

1687

0.25(0.26)

33209

0.31(0.29)

8

104

1748

0.24(0.25)

33833

0.32(0.30)

9

95

1369

0.26(0.26)

30472

0.31(0.29)

10

96

1413

0.27(0.26)

30513

0.32(0.29)

11

102

1551

0.25(0.25)

33513

0.30(0.28)

12

78

1070

0.24(0.26)

23437

0.31(0.29)

13

83

1249

0.25(0.25)

27385

0.32(0.30)

14

82

1290

0.25(0.25)

27452

0.33(0.30)

15

75

1081

0.27(0.27)

22531

0.33(0.30)

16

73

1150

0.24(0.25)

22891

0.33(0.30)

17

70

1195

0.27(0.26)

23281

0.31(0.29)

18

63

987

0.23(0.23)

19391

0.32(0.29)

19

63

966

0.25(0.26)

20719

0.31(0.29)

20

68

1133

0.24(0.24)

21775

0.35(0.31)

21

63

1032

0.25(0.26)

19720

0.32(0.30)

22

60

946

0.26(0.26)

19212

0.31(0.29)

23

49

772

0.25(0.26)

15958

0.31(0.29)

24

60

901

0.24(0.24)

18087

0.32(0.30)

25

42

749

0.25(0.25)

14861

0.31(0.29)

26

48

840

0.25(0.26)

15999

0.30(0.30)

27

43

670

0.26(0.26)

13563

0.32(0.30)

28

40

704

0.25(0.26)

13407

0.32(0.30)

29

45

806

0.26(0.26)

14420

0.33(0.30)


Overall

2333

38008

0.25(0.26)

749145

0.32(0.30)


The results are for each of the 29 autosomes in the recent generations for moderate heritability (0.25) and POP1 (40 k) and POP2 (800 k) over 10 replicates. SD: Standard Deviation.

Brito et al. BMC Genetics 2011 12:80   doi:10.1186/1471-2156-12-80

Open Data