Table 2

Distribution of SNP sites within exon2 of MHC IIB allelic sequences of half-smooth tongue sole

Serial

number

Position

Base

type

Allele no.

(n = 88)

Frequency

Serial

number

Position

Base

type

Allele no.

(n = 88)

Frequency


1

6

T

87

0.989

39

104-106

ATC

51

0.580

C

1

0.011

ATT

1

0.011

2

9-11

CTA

52

0.591

ATG

1

0.011

GTA

1

0.011

CAG

35

0.398

GAG

35

0.398

40

109-111

TCG

84

0.955

3

12

C

17

0.193

TCA

2

0.023

T

34

0.386

CCG

1

0.011

A

7

0.080

TTG

1

0.011

G

30

0.341

41

124-126

GGA

49

0.557

4

13

A

82

0.932

AGA

12

0.136

T

5

0.057

GAG

27

0.307

G

1

0.011

42

130

A

56

0.636

5

14-15

AT

30

0.341

T

32

0.364

AC

1

0.011

43

143

C

2

0.023

TT

55

0.625

T

86

0.977

CT

2

0.023

44

148-149

AT

49

0.557

6

16

C

32

0.364

TA

8

0.091

T

20

0.227

TT

31

0.352

A

36

0.409

45

156-157

CC

1

0.011

7

18

G

39

0.443

TA

24

0.273

A

49

0.557

TC

63

0.716

8

19

T

33

0.375

46

163

C

87

0.989

G

20

0.227

T

1

0.011

C

30

0.341

47

168-169

AG

71

0.807

A

5

0.057

GC

17

0.193

9

20

G

46

0.523

48

170-172

ATG

75

0.852

A

34

0.386

ATT

9

0.102

C

8

0.091

TTG

3

0.034

10

21-23

ACA

53

0.602

ACT

1

0.011

GTG

35

0.398

49

174

G

1

0.011

11

24

G

74

0.841

A

87

0.989

A

14

0.159

50

177-178

GA

86

0.977

12

25

A

35

0.398

AA

1

0.011

G

31

0.352

GG

1

0.011

T

19

0.216

51

181-183

GTC

80

0.909

C

3

0.034

ATC

7

0.080

13

26

T

5

0.057

GAA

1

0.011

C

83

0.943

52

193

C

24

0.273

14

28-29

CC

52

0.591

T

64

0.727

CA

1

0.011

53

196

A

62

0.705

GA

35

0.398

G

26

0.295

15

32-33

CG

35

0.398

54

198

A

69

0.784

TG

1

0.011

G

19

0.216

TC

52

0.591

55

199-200

GG

40

0.455

16

38-39

CA

52

0.591

GT

18

0.205

CG

1

0.011

TG

8

0.091

TA

35

0.398

CG

22

0.25

17

40-41

AC

51

0.580

56

205

A

67

0.761

GC

1

0.011

C

20

0.227

AT

35

0.398

G

1

0.011

CT

1

0.011

57

207-208

GA

62

0.705

18

44

C

36

0.409

AC

3

0.034

T

52

0.591

GG

8

0.091

19

47-49

AAA

52

0.591

GC

5

0.057

AAG

1

0.011

58

210-211

AA

86

0.977

TAA

19

0.216

GA

1

0.011

TGA

16

0.182

AT

1

0.011

20

51

G

53

0.602

59

218

G

87

0.989

C

35

0.398

T

1

0.011

21

53

G

36

0.409

60

220

A

87

0.989

C

52

0.591

G

1

0.011

22

55-56

AC

69

0.784

61

226-227

TG

47

0.534

AT

18

0.205

TA

40

0.455

GC

1

0.011

CG

1

0.011

23

58

A

87

0.989

62

228

A

50

0.568

G

1

0.011

C

29

0.330

24

63-64

GC

51

0.580

T

9

0.102

GT

1

0.011

63

229

A

82

0.932

GA

1

0.011

T

2

0.023

CA

35

0.398

G

4

0.045

25

67

A

68

0.773

64

231-234

AAC

61

0.693

T

20

0.227

ACT

2

0.022

26

72

C

13

0.148

CAC

20

0.227

G

40

0.455

AGC

5

0.057

T

35

0.398

65

237-238

GG

79

0.898

27

74

C

40

0.455

GA

5

0.057

G

48

0.545

AG

4

0.045

28

78

C

38

0.432

66

240-241

AA

10

0.114

T

50

0.568

AT

54

0.614

29

80

C

35

0.398

CT

23

0.261

T

53

0.602

GT

1

0.011

30

82-83

AC

52

0.591

67

242-243

TG

46

0.523

AT

35

0.398

TT

19

0.216

GT

1

0.011

GG

23

0.261

31

84-85

TT

30

0.341

68

245-246

CT

68

0.773

CT

23

0.261

CA

19

0.216

TA

35

0.398

AT

1

0.011

32

87

A

87

0.989

69

248

T

2

0.023

G

1

0.011

C

86

0.977

33

90

A

86

0.977

70

250-253

ACCA

10

0.114

G

2

0.023

ACGC

64

0.727

34

92-94

ACT

52

0.591

AGCC

1

0.011

GAG

36

0.409

GGAC

12

0.136

35

96

G

35

0.398

ACGG

1

0.011

A

53

0.602

71

254-256

TGC

70

0.796

36

98-99

GA

42

0.477

TGG

12

0.136

GT

11

0.125

GTT

6

0.068

AT

35

0.398

72

256-258

TT

12

0.136

37

100

C

1

0.011

TC

63

0.716

A

38

0.432

CC

2

0.023

T

49

0.557

TG

11

0.125

38

101-102

CA

34

0.386

CG

16

0.182

GA

3

0.034

TG

31

0.352

TA

4

0.046


Du et al. BMC Genetics 2011 12:78   doi:10.1186/1471-2156-12-78

Open Data