Table 3

Association of markers with different internal inclusion traits in the confirmation study

SNP ID/marker

Genomic position

Marker informative in

Association found in

Trait and p-values


rs14762832

31,855,282

LB

LB

Score LB (p < 0.001)


rs16766794

31,955,874

LB


rs16766752

32,044,210

LB


rs13795687

32,122,845

LB


rs16766685

32,276,606

LB


rs16766334

33,022,548

LB

score LB (p < 0.05)


rs16766274

33,092,178

LB


rs16766257

33,167,074

LB


rs14761556

33,443,086

LB


rs14761487

33,508,907

LB

LB

scoreLB (p < 0.01)

groupLB (p = 0.02)

number of spotsLB (p < 0.05)


rs14761341

33,749,060

LB, Hy


rs14761267

33,832,110

LB, Hy

LB, Hy

numberLB (p < 0.02)

size LB (p < 0.02)

MSHy (p < 0.05)


rs14761196

33,996,581

Hy

Hy

MSHy (p < 0.01)

BLHy (p < 0.04)


MCW241

34,264,059

LB,Hy

LB, Hy

MSHy (p < 0.001)

BLHy (p < 0.001)

scoreLB (p < 0.01)


s107245031

34,315,708

LB

LB

groupLB (p < 0.001)

number of spotsLB p < 0.01)

sizeLB (p < 0.001)


rs147632252

34,275,496

LB, Hy


miRNA-1556

34,315,890

LB

LB

groupLB (p < 0.002)

number of spotsLB (p < 0.002)

sizeLB (p < 0.002)


rs16767662

34,996,069


rs16110443

36,236,398


rs14764985

36,533,455

LB

LB

groupLB (p < 0.03)

number of spotLB (p < 0.02)


rs16111109

36,959,973


rs14766124

38,170,684

LB


rs16132985

41,098,862

LB


Markers (their informativity and relative genomic positions) in each population can be found in the 3rd column (LB = Lohmann Brown, Hy = Hy-Line). The population and trait showing the association (corresponding p-values in parenthesis) are indicated in the 4th and 5th columns.

1 ZO-2 snupe

2 not mapped in WASHUC2, position based on Groenen et al. 2009 [24].

Honkatukia et al. BMC Genetics 2011 12:55   doi:10.1186/1471-2156-12-55

Open Data