Table 3

Haplotypes of polymorphic sites on number-increase-type and wild-type alleles of swine VRTN gene

STS for SNP/indel a

Q (number-increase type)

q (wild type, major)

q' (wild type, minor; found in Landrace)


NV004

T

C

T

NV007

C

G

C

NV083

    A

    G

    G

NV015(2)

A, G

C, A

A, G

NV149

    T

    A

    A

NV090

    T

    C

    C

NV024

    A

    T

    T

NV025

G

A

G

NV027(2)

    C
, C

    A
, T

    A
, C

NV028

A

G

A

NV123

    ins (PRE1 291 bp)

    del (PRE1 291 bp)

    del (PRE1 291 bp)

NV104

G

A

G

NV030(4)

A, T, C, T

G, G, T, C

A, T, C, T

NV035

C

G

C

NV040(7)

del, A, A, G, G, C, T

A, G, T, A, A, T, C

del, A, A, G, G, C, T

NV048

A

G

A

NV049(2)

T, C

C, T

T, C

NV107

    AAA

    AAAAA

    AAAAA

NV055(2)

T, GA

C, del

T, TGA

NV058(4)

T, T, G, G

C, C, A, C

T, T, G, G

NV062(2)

C, G

T, A

C, G

NV064

G

A

G

NV065

C

T

C

NV067

    del

    C

    C

NV071

    C

    A

    A


The nine underlined polymorphic sites were segregated between the Q and wt (q and q') alleles.

a Numbers in parentheses are numbers of polymorphic sites at each STS.

Mikawa et al. BMC Genetics 2011 12:5   doi:10.1186/1471-2156-12-5

Open Data