Additional file 1.

Supplemental materials. Figure S1: A boxplot of the observed breed allele frequencies for the top ranked 50 SNP markers for each selection method. Figure S2: A plot of the percentage assignment success with cumulative number of top-ranked SNP markers at the 4 stringency threshold levels. The results of this individual assignment test is for the training set and hold-out set where the selection implemented was Wright's pairwise FST. Table S1: Type I (false positives) and II errors (false negatives). The table details the error rates that occurred in the individual assignment analysis, using pairwise Wright's FST at the lowest stringency threshold level (LLR > 0).

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Wilkinson et al. BMC Genetics 2011 12:45   doi:10.1186/1471-2156-12-45