Table 2

SNP information per Bos Taurus chromosome

BTA

SNP

Length (Mbp)

SNP interval (bp)

Monomorph

Genorate < 80%

Freq < 0.006


01

776

-

-

1

6

84

1

3,011

160.91

53,371

4

25

355

2

2,451

140.64

57,333

20

19

269

3

2,342

127.13

54,212

12

11

260

4

2,300

124.09

53,930

11

20

239

5

2,215

125.78

56,788

5

18

214

6

2,844

122.39

43,050

12

25

334

7

2,017

111.67

55,392

8

14

209

8

2,131

116.93

54,818

15

15

243

9

1,860

108.05

58,090

14

20

206

10

1,911

106.10

55,406

14

11

202

11

2,193

110.01

50,187

18

12

239

12

1,512

85.22

56,324

6

14

147

13

1,689

84.00

49,732

11

12

155

14

2,122

81.29

38,272

9

17

222

15

1,446

84.23

58,130

5

7

169

16

1,455

77.83

53,454

8

12

183

17

1,561

76.40

48,942

5

14

159

18

1,282

66.04

51,429

3

8

131

19

1,452

65.13

44,826

5

7

147

20

1,479

75.41

50,985

3

9

156

21

1,246

69.08

55,440

5

15

130

22

1,256

61.75

49,161

4

10

139

23

1,169

53.27

45,570

7

10

107

24

1,296

64.93

50,141

10

13

159

25

1,256

43.44

34,617

6

9

109

26

1,131

51.00

45,097

7

6

152

27

933

48.73

52,280

3

13

117

28

899

46.01

51,184

6

5

94

29

1,029

51.78

50,371

6

4

109

X

591

88.46

149,940

2

2

55


Total

50,855

2,628

245

383

5,494


1 unmapped SNPs

Total number of SNPs, map length, average SNP interval, number of monomorphic SNPs, number of SNPs with a genotyping rate (genorate) < 80% and number of SNPs with a genotype frequency (freq) < 0.006 for all Bos Taurus (BTA) chromosomes.

Bouwman et al. BMC Genetics 2011 12:43   doi:10.1186/1471-2156-12-43

Open Data