Table 2

Genetic characterization of 65 EST-SSRs in common beans

Locus

p(1)

Na

Ho

PIC

Transf. species(2)


BMc78

0.594

5

0.063

0.551

2, 4

BMd64-1

-

-

-

-

1,2,3, 4

PVEST001

0.429

3

0.000

0.567

PVEST006

0.313

8

0.000

0.780

2,3,4, 7

PVEST007

0.625

4

0.000

0.524

-

PVEST008

0.375

7

0.063

0.715

3,4,5,6,7,8, 9

PVEST010

0.750

2

0.000

0.305

2,3,4,5,7, 8

PVEST017

0.267

6

0.067

0.779

1,2,3,4,5,7, 8

PVEST023

0.600

2

0.000

0.365

2,4, 8

PVEST026

0.433

3

0.067

0.572

2,3,4,5, 7

PVEST029

0.733

3

0.000

0.370

2, 4

PVEST030

0.313

5

0.000

0.717

2,3,4,5,7,8,9, 10

PVEST034

0.625

3

0.000

0.428

2,3,4,6, 7

PVEST042

0.333

6

0.067

0.727

-

PVEST049

0.600

3

0.000

0.440

2,4, 5

PVEST055

0.688

4

0.000

0.458

2,3,4,5,6, 7

PVEST061

0.625

2

0.000

0.359

2,3,4, 5

PVEST071

0.625

4

0.000

0.483

2,3,4, 7

PVEST072

0.267

8

0.000

0.827

2,4, 8

PVEST073

0.625

2

0.000

0.359

2,4,5,7,8, 10

PVEST086

0.688

2

0.000

0.337

2,3,4,5,6,7, 8

PVEST098

0.406

4

0.063

0.602

2,4,5, 7

PVEST099

0.813

2

0.000

0.258

2,3,4,5,6,7 e 8

PVEST101

0.688

3

0.000

0.398

2,3,4,6, 7

PVEST106

-

-

-

-

1,2,3, 4

PVEST107

-

-

-

-

1,2,3,4,5,6,7, 8

PVEST112

-

-

-

-

2,3,4, 7

PVEST114

0.625

2

0.000

0.359

2,4,5

PVEST120

-

-

-

-

2,3, 4

PVEST121

0.786

2

0.000

0.280

2,3 4,5, 8

PVEST127

-

-

-

-

1,2,3,4,5,6,7,8, 10

PVEST137

0.219

11

0.188

0.851

2,3,4,5,6,7, 8

PVEST138

-

-

-

-

2,3,4,5,7, 8

PVEST144

-

-

-

-

2, 4

PVEST147

0.433

3

0.067

0.572

2,3, 4

PVEST161

-

-

-

-

2,3,4, 8

PVEST164

0.500

3

0.000

0.511

2,3,4,5,6, 7

PVEST166

0.438

4

0.000

0.612

2,3,4,7, 8

PVEST168

-

-

-

-

2,3,4,5,6, 7

PVEST186

0.600

3

0.000

0.485

2,4, 8

PVEST195

-

-

-

-

1,2,3,4,5, 7

PVEST196

0.688

3

0.000

0.398

2,3,4, 5

PVEST197

-

-

-

-

1,2,3,4,7,8, 10

PVEST203

0.929

2

0.000

0.124

-

PVEST217

0.500

3

0.000

0.544

2,3,4,5,7,8, 10

PVEST221

0.625

2

0.000

0.359

3,4, 5

PVEST232

0.688

2

0.000

0.337

2,3,4,6, 7

PVEST233

0.625

3

0.000

0.482

2,4, 5

PVEST234

0.625

2

0.000

0.359

2,3,4,5,7, 8

PVEST249

0.625

2

0.000

0.359

-

PVEST251

0.667

2

0.000

0.346

2,3,4,8,9, 10

PVEST258

0.286

7

0.000

0.805

2,3, 4

PVEST259

0.625

3

0.000

0.428

2,3,4, 5

PVEST260

0.438

3

0.000

0.575

2,3,4,5,6,7, 8

PVEST271

0.625

2

0.000

0.359

2,4,6, 7

PVEST272

0.533

3

0.000

0.509

2,3,4,5,7, 8

PVEST293

0.563

2

0.000

0.371

2,3,4

PVEST304

0.467

3

0.000

0.556

2, 4

PVEST320

0.625

2

0.000

0.359

2,3,4,5,6,7, 8

PVEST336

0.563

2

0.000

0.371

2,3,4,5,6,7, 8

PVEST359

0.688

2

0.000

0.337

2,4

PVEST368

0.688

2

0.000

0.337

2,3,4,5,6, 7

X04001

0.643

3

0.000

0.464

1,2,3,4,5, 7

X13329

0.625

3

0.000

0.468

3,4,5, 7

X60000

0.750

3

0.000

0.354

2, 4


Detailed information of the allele frequency (p) average over locus, the number of alleles per locus (Na), the observed heterozygosity (Ho), the polymorphism information content (PIC) and the species for which the SSRs were transferable.

(1)Average allele frequency

(2) Transferable species: 1- Medicago sativa; 2- Phaseolus lunatus; 3- P. coccineus; 4- P. acutifolius; 5- Vigna mungo; 6- V. angularis; 7-V. unguiculata; 8- Glicine max; 9- Arachis hypogaea; 10- Dipteryx alata.

Garcia et al. BMC Genetics 2011 12:41   doi:10.1186/1471-2156-12-41

Open Data