Table 1

List of the SNP markers significantly associated with skatole levels in the pig population analyzed

Allele Frequency


SNP

Position

Major Allele

Minor Allele

Regression Coefficient

p-value

q-value


Region 1

MARC0019446

636,696

T: 0.52

G: 0.48

0.26

0.0000323

0.02

ASGA0084674

645,690

T: 0.51

G: 0.49

0.26

0.0000420

0.02

Region 2

MARC0044930

1,795,517

G: 0.77

A: 0.23

0.31

0.0000331

0.02

ASGA0096130

1,802,015

A: 0.74

C: 0.26

0.24

0.0002333

0.05

ASGA0098975

1,939,519

G: 0.76

A: 0.24

0.32

0.0000758

0.02

ALGA0107039

2,113,937

G: 0.77

T: 0.23

0.30

0.0000352

0.02

ALGA0116170

2,117,567

G: 0.76

T: 0.24

0.27

0.0002347

0.05

ALGA0115841

2,125,025

C: 0.76

T: 0.24

0.30

0.0002955

0.05

ALGA0110693

2,156,144

C: 0.73

A: 0.27

0.31

0.0002065

0.05

Region 3

ALGA0115538

3,353,995

G: 0.70

A: 0.30

0.25

0.0003122

0.05

MARC0034202

3,573,079

G: 0.79

A: 0.21

0.27

0.0002793

0.05

ALGA0034369

3,596,641

A: 0.75

G: 0.25

0.31

0.0000290

0.02

MARC0067306

3,923,036

T: 0.73

C: 0.27

-0.26

0.0000801

0.03

MARC0019712

3,936,297

C: 0.79

T: 0.21

0.29

0.0001532

0.04

Isolated Markers

MARC0009863

5,222,760

G: 0.51

A: 0.49

0.24

0.0001098

0.03

ALGA0113531

5,901,175

T: 0.55

G: 0.45

-0.22

0.0002927

0.05


All markers are located on SSC6.

Ramos et al. BMC Genetics 2011 12:35   doi:10.1186/1471-2156-12-35

Open Data