Table 1

Variants selected for genotyping

MCP1

variant

rs #

Primer oligonucleotides

Sensor/Anchor oligonucleotides


-97569

C/G

rs9891330

F-TCTGATGCAGACAGCGAG

S-GCCTCCCCCACCCCCA

R-CACCTGGAGTCCCAGTT

A-ATAGCTGTCGGGAGAGTCTGTATTTGAAAGAGAA


-38600

C/T

rs8075337

F-CTTCTGTGAGCATTGGGT

S-ACTTCTTTTGCTGTGTTTTATTTTATTTTC

R-AGAAACAAAAATTAGGGCATCTAC

A-CCAACATCTGGATTTCTTCAGGGACAGTTTACATT


-1727

A/T

rs3917886

F-TGGGATTCTCCAGGAAACC

S-GAAGAAGAGATACTGGAATGGAAACATCC

R-ACCCAGCTTTCGTTAGG

A-GGGTGGGAGTCTCAGCACATCTACTATTCTGTC


Int1:96

C/G

rs41507946

F-TAAGGCCCCCTCTTCTTC

S-CCCACAGTCTTGCTTTAACGCTAC

R-CTGTGTGGTTGGGCTCA

A-TTTCCAAGATAAGGTGACTCAGAAAAGGACAAGGG


Int1:554-567

W/D

rs3917887

F-TCCCCAGCTGATCTTCC

S-TTTAACCGCTCCTCCTTC

R-TGACTCAGTTTCCTATGCTGTA

A-GTCCGTCTTAATGACACTTGTAGGCATTATCTAG


+1542

C/T

rs13900

F-GACCACCTGGACAAGCA

S-TAGCTTTCCCCAGACACCCTGTTTTA

R-ATTACTTAAGGCATAATGTTTCACATC

A-CACAACCCAAGAATCTGCAGCTAACTTATTTTCCC


+2413

G/T

rs3917890

F-ATGAGACCTGAACTTATTATTTA

S-GATCATTAAGAAAGGAGAAGGAAGAGTGG

R-TTCACCCTAACATTCAAATC

A-AGCAAATACCTGGAGGTAGAAATGGTGATGATGTGTAC


+2580

A/T

rs41343046

F-GCCCACACCAATGTCAA

S-AAGGGATTTGAATGTTAGGGTGAAAAGATA

R-CTGAATCTCTAAACATGGCAC

A-ACTCAACTCTGTAGGTTAAAAGGAAACGTTGAGAA


F, forward primer; R, reverse primer; S, sensor; A, anchor; Int1, intron 1; D, deletion; W, wildtype

Intemann et al. BMC Genetics 2011 12:34   doi:10.1186/1471-2156-12-34

Open Data