Table 3

Permutation tests for Hudson's statistic.

Gene

Subdivisions

Kst

Ks

Kt

P valuea


Avr3a

A

vs

B/C

-0.023100

0.040122

0.039216

NS

A

vs

V

nan

0.000

0.000

NS

B/C

vs

V

-0.030565

0.043854

0.042553

NS

N

vs

V

0.037646

1.844118

1.916256

NS

N

vs

A

0.065266

1.589757

1.700758

NS

N

vs

B/C

0.127264

0.999764

1.145551

NS


Cox1

A

vs

B/C

-0.021429

0.039286

0.038462

NS

A

vs

V

0.856818

0.068182

0.476190

<0.001

B/C

vs

V

0.774561

0.083859

0.371981

<0.001

N

vs

V

0.487489

0.263577

0.514286

NS

N

vs

A

0.131826

0.123671

0.142450

NS

N

vs

B/C

0.093524

0.115370

0.127273

NS


Ras

A

vs

B/C

-nan

0.000

0.000

NS

A

vs

V

0.300420

0.835913

1.194879

0.001

B/C

vs

V

0.386997

0.557276

0.909091

<0.001

N

vs

V

0.237184

1.015038

1.330645

NS

N

vs

A

-nan

0.000

0.000

NS

N

vs

B/C

-nan

0.000

0.000

NS


β-tubulin

A

vs

B/C

0.071097

0.443943

0.477922

0.001

A

vs

V

0.022594

0.662711

0.678030

NS

B/C

vs

V

0.002664

0.161134

0.161565

NS

N

vs

V

0.082367

1.938315

2.112299

NS

N

vs

A

0.075742

1.999553

2.163415

NS

N

vs

B/C

0.178038

1.170111

1.423559

<0.001


Phytophthora infestans population subdivision was tested in the Northern Andean region for Avr3a, Cox1, Ras and β-tubulin.; V: Venezuela; A: Antioquia; N: Nariño; B: Boyacá; C: Cundinamarca.

Cárdenas et al. BMC Genetics 2011 12:23   doi:10.1186/1471-2156-12-23

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