Open Access Research article

An annotated genetic map of loblolly pine based on microsatellite and cDNA markers

Craig S Echt1*, Surya Saha23, Konstantin V Krutovsky4, Kokulapalan Wimalanathan6, John E Erpelding5, Chun Liang6 and C Dana Nelson1

Author Affiliations

1 Southern Institute of Forest Genetics, Southern Research Station, USDA Forest Service, Saucier, MS 39574, USA

2 Department of Plant & Soil Sciences, Mississippi State University, Mississippi State, Mississippi 39762, USA

3 Current address: Department of Plant Pathology and Plant-Microbe Biology, Cornell University, Ithaca, New York 14853, USA

4 Department of Ecosystem Science & Management, Texas A&M University, College Station, Texas 77843-2138, USA

5 Crop Genetics Research Unit, USDA Agricultural Research Service, Stoneville, Mississippi, USA

6 Department of Botany, Miami University, Oxford, Ohio, 45056, USA

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BMC Genetics 2011, 12:17  doi:10.1186/1471-2156-12-17

Published: 26 January 2011

Additional files

Additional file 1:

Table of all submitted markers' GenBank and dbSTS accession numbers. This tab-delimited text file can be viewed with any web browser, word processor, or spreadsheet program.

Format: TXT Size: 13KB Download file

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Additional file 2:

Table of data for 517 P. taeda marker loci. Data include: marker ID, map position and linkage data, database accession IDs, forward and reverse primer sequences, marker type, allele detection method, SSR type, expected and observed amplicon lengths, marker citations, aliases, and supplemental notes This HTML data table conforms to the XHTML 1.1 standard of the World Wide Web Consortium (W3C), as determined at http://validator.w3.org webcite, and can be viewed with any web browser, as well as with Microsoft Excel or Word.

Format: HTM Size: 371KB Download file

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Additional file 3:

Provenances for 14 population samples and population genetic parameters for 185 P. taeda SSR marker loci. Data include: GenBank ID, allele frequency statistics, and assigned linkage group This tab-delimited text file can be viewed with any web browser, word processor, or spreadsheet program.

Format: TXT Size: 18KB Download file

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Additional file 4:

Marker genotype segregation codes in JoinMap format for the base and qtl pedigrees (Tables S1 - S4), reasons for excluding certain markers (Tables S5, S6), and size-estimated SSR allele genotypes of the four mapping pedigree parents and two control calibration standards (Table S7) This tab-delimited text file can be viewed with any web browser, word processor, or spreadsheet program.

Format: TXT Size: 380KB Download file

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Additional file 5:

Map data used in Figure 1, formatted for MAPCHART input. This tab-delimited text file can be viewed with any web browser, word processor, or spreadsheet program. Changing the file extension from .txt to .mct will allow the file to be opened by MAPCHART to generate the map graphic on a Windows platform.

Format: TXT Size: 18KB Download file

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Additional file 6:

Comparative P. taeda genetic maps: Round-2 map aligned with map of Krutovsky et al. 2004

Format: PDF Size: 73KB Download file

This file can be viewed with: Adobe Acrobat Reader

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Additional file 7:

Comparative P. taeda genetic maps: Map of Krutovsky et al. 2004 aligned with map of Eckert et al. 2009.

Format: PDF Size: 76KB Download file

This file can be viewed with: Adobe Acrobat Reader

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Additional file 8:

Table of DNA sequence annotations for reported markers. Data include: marker and GenBank accession number, clone ID, species of origin, UniGene cluster ID, assigned GO term and GO lineage, assigned reference protein, marker type, P. taeda map status, and supplemental notes This HTML data table conforms to the XHTML 1.1 standard of the World Wide Web Consortium (W3C), as determined at http://validator.w3.org webcite, and can be viewed with any web browser, as well as with Microsoft Excel or Word.

Format: HTM Size: 378KB Download file

Open Data