Table 6

Allele substitution effect (standard error in parenthesis) between SNPs and milk performance within Holstein-Friesian sires

SNP

Milk Yield

Protein Yield

Fat Yield

Protein Percent

Fat percent

SCS

(kg)

(kg)

(kg)

(% *100)

(% *100)

(loge SCC *100)


Average DYD1

150 (237)

5.6 (6.8)

5.7 (7.9)

1.29 (7.02)

0.65 (13.96)

3.16 (11.38)

TLR4-2021 (T→C)

-14.4 (12.29)

0.41 (0.34)

-0.67 (0.44)

0.01 (0.01)

-0.01 (0.01)

0.01 (0.01)

CXCR1-777 (C→G)

2.86 (13.06)

-0.02 (0.36)

1.01 (0.46) *

0.02 (0.01)

-0.01 (0.01)

-0.01 (0.01)

CD14-1908 (A→G)

-27.43 (16.18) †

-0.98 (0.45) *

-1.32 (0.57) *

-0.01 (0.01)

-0.01 (0.01)

-0.01 (0.01)

CARD15-3168 (A→T)

-6.36 (9.57)

-0.31 (0.36)

-0.21 (0.34)

-0.01 (0.01)

0.01 (0.01)

0.01 (0.01)

IL8-182 (A→G)

8.31 (9.52)

0.32 (0.26)

0.52 (0.34)

0.01 (0.01)

0.01 (0.01)

-0.01 (0.01)

SERPINA1-164 (A→G)

-5.19 (10.23)

-0.28 (0.28)

-0.55 (0.36)

-0.29 (0.37)

-0.64 (0.77)

0.7 (0.61)

SERPINA1-269 (C→T)

13.3 (10.32)

0.48 (0.29) †

-0.74 (0.36) *

-0.04 (0.38)

-2.34 (0.77) **

0.65 (0.62)


1 Average DYD values for each phenotype investigated (standard deviation in parenthesis) Significance of difference from zero = P < 0.1; * = P < 0.05; ** = P < 0.01.

Beecher et al. BMC Genetics 2010 11:99   doi:10.1186/1471-2156-11-99

Open Data