Table 5

Genotype frequencies, minor allele frequencies (MAF) and significance of deviation from Hardy-Weinberg equilibrium (HWE) for the SNPs investigated within the Holstein-Friesian bull cohort

SNP1

Genbank

BTA

Position

Genotype

SNP Database

Genotype Frequency (%)

MAF (%)

HWE


TLR4-2021

NM_174198

8

112436581

T/T

rs8193069

0.04

0.18

0.03

T/C

0.27

C/C

0.69

CXCR1-777

U19947

2

110617059

C/C

0.01

0.34

0.00

C/G

0.68

G/G

0.31

TLR4-452

NM_174198

8

112435012

A/A

rs8193049

0.98

0.0083

0.80815

A/C

0.02

TLR4-1040

NM_174198

8

112435600

A/C

rs8193053

0.02

0.01

0.81

C/C

0.98

TLR4-1142

NM_174198

8

112435702

A/A

rs8193055

1.00

0

TLR4-1948

NM_174198

8

112436508

A/G

rs8193066

0.02

0.0083

0.80837

G/G

0.98

CD14-1908

EU148609

7

51086277

A/A

0.84

0.08

0.25

A/G

0.15

G/G

0.01

CARD15-3168

AY518737

18

18169217

A/A

rs43710288

0.25

0.49

0.18698

A/T

0.48

T/T

0.27

IL8-182

AY849380

6

91792392

A/A

rs43707839

0.29

0.47

0.32

A/G

0.48

G/G

0.23

IL8-1203

AY849380

6

91793413

T/T

rs41255761

1.00

0.00

IL8-1226

AY849380

6

91793436

A/A

rs41255762

0.29

0.49

0.69521

A/G

0.49

G/G

0.22

SERPINA1-164

X63129

21

59307330

A/A

rs41257077

0.11

0.33

0.74

A/G

0.45

G/G

0.44

SERPINA1-269

X63129

21

59307225

C/C

0.45

0.34

0.46

C/T

0.42

T/T

0.13

SERPINA1-284

X63129

21

59307210

G/G

0.44

0.35

0.18

G/T

0.43

T/T

0.13

SERPINA1-407

X63129

21

59307087

C/C

rs41257068

0.11

0.35

0.07

C/G

0.47

G/G

0.42

SERPINA1-989

X63129

21

59304656

C/C

0.43

0.34

0.94

C/T

0.46

T/T

0.11


1 SNPs genotyped by iPLEX gold technology (Sequenom)

Beecher et al. BMC Genetics 2010 11:99   doi:10.1186/1471-2156-11-99

Open Data