Table 4 |
||||||||
|
SNP associations with carcass traits and fat deposition traits |
||||||||
|
SNP |
Gene/BTA |
Allele substitution |
Culled cow carcass weight (kg) |
Progeny carcass weight (kg) |
Progeny carcass conformation1 |
Progeny carcass fat1 |
Angularity2 |
Body condition score2 |
|
|
||||||||
|
rs42940189 |
CALCR/BTA4 |
A→G |
-0.880 (0.965) |
-0.901 (0.747) |
-0.030 (0.031) |
-0.014 (0.027) |
-0.154 (0.156) |
0.104 (0.125) |
|
rs42940187 |
CALCR/BTA4 |
C→T |
0.738 (0.840) |
0.877 (0.650) |
0.012 (0.027) |
-0.002 (0.024) |
0.294* (0.129) |
-0.239* (0.103) |
|
GRB10_p.A5394141C |
GRB10/BTA4 |
A→C |
-2.044 (1.529) |
-0.453 (1.191) |
0.004 (0.049) |
0.071† (0.043) |
0.435* (0.216) |
-0.052 (0.171) |
|
rs43375833 |
GRB10/BTA4 |
C→T |
-0.333 (0.641) |
0.623 (0.498) |
0.047* (0.021) |
0.002 (0.018) |
-0.113 (0.097) |
0.171* (0.078) |
|
rs42575466 |
ZNF215/BTA15 |
A→G |
2.118 (1.294) |
1.394 (0.996) |
-0.071† (0.042) |
-0.020 (0.037) |
0.506* (0.217) |
-0.180 (2.584) |
|
rs42575474 |
ZNF215/BTA15 |
A→G |
1.882** (0.648) |
1.168* (0.503) |
0.0174 (0.021) |
-0.030† (0.018) |
0.290** (0.095) |
1.805 (1.183) |
|
PEG3_p.A64370595G |
PEG3/BTA18 |
A→G |
-0.065 (0.644) |
-0.257 (0.500) |
0.006 (0.021) |
-0.030† (0.018) |
0.009 (0.091) |
-0.045 (0.073) |
|
PEG3_p.C64367437T |
PEG3/BTA18 |
C→T |
0.180 (0.643) |
0.095 (0.499) |
-0.024 (0.021) |
0.023 (0.018) |
0.028 (0.090) |
0.018 (1.145) |
|
rs17871322 |
PEG3/BTA18 |
A→G |
-0.624 (0.648) |
-0.490 (0.505) |
0.032 (0.021) |
-0.005 (0.018) |
-0.075 (0.091) |
0.044 (1.138) |
|
rs41899915 |
ZIM2/BTA18 |
C→G |
0.104 (0.767) |
-0.331 (0.596) |
-0.020 (0.025) |
-0.011 (0.022) |
-0.081 (0.106) |
0.987 (1.295) |
|
rs41899913 |
ZIM2/BTA18 |
C→G |
0.131 (0.832) |
0.332 (0.651) |
-0.013 (0.027) |
0.006 (0.024) |
0.244* (0.112) |
0.636 (1.409) |
|
rs41899911 |
ZIM2/BTA18 |
C→T |
0.120 (0.766) |
-0.321 (0.596) |
-0.024 (0.025) |
-0.010 (0.022) |
-0.059 (0.106) |
0.946 (1.291) |
|
rs41899910 |
ZIM2/BTA18 |
C→T |
0.527 (0.685) |
0.101 (0.531) |
0.015 (0.022) |
-0.005 (0.019) |
0.121 (0.096) |
-0.891 (1.158) |
|
RASGRF1_p.C25039690T |
RASGRF1/BTA21 |
A→G |
-0.375 (0.584) |
0.414 (0.459) |
0.035† (0.019) |
0.003 (0.017) |
-0.154† (0.085) |
-1.540 (1.056) |
|
rs42194502 |
PHLDA2/BTA29 |
A→T |
0.064 (0.975) |
-0.322 (0.762) |
-0.018 (0.032) |
0.007 (0.027) |
0.026 (0.135) |
0.178 (1.678) |
|
rs42637579 |
TSPAN32/BTA29 |
A→G |
-0.076 (0.642) |
-0.504 (0.504) |
-0.023 (0.021) |
0.015 (0.018) |
0.100 (0.090) |
0.499 (1.130) |
|
rs42637578 |
TSPAN32/BTA29 |
C→T |
1.918† (1.147) |
0.757 (0.899) |
0.031 (0.038) |
-0.054 (0.039) |
-0.022 (0.172) |
-1.055 (2.076) |
|
|
||||||||
|
Standard errors for each trait are shown in parentheses. Levels of significance: †P ≤ 0.10; *P ≤ 0.05; **P ≤ 0.01. Progeny carcass fat score and progeny carcass conformation score are shown on a scale of 1.00 (low) to 15.00 (high) according to Hickey et al. [97]. 1 A value of 1 equates to 1 percentage unit. 2 Expressed in genetic standard deviations. |
||||||||
|
Magee et al. BMC Genetics 2010 11:93 doi:10.1186/1471-2156-11-93 |
||||||||
