Table 4

SNP associations with carcass traits and fat deposition traits

SNP

Gene/BTA

Allele substitution

Culled cow carcass weight (kg)

Progeny carcass weight (kg)

Progeny carcass conformation1

Progeny carcass fat1

Angularity2

Body condition score2


rs42940189

CALCR/BTA4

A→G

-0.880

(0.965)

-0.901

(0.747)

-0.030

(0.031)

-0.014

(0.027)

-0.154

(0.156)

0.104

(0.125)

rs42940187

CALCR/BTA4

C→T

0.738

(0.840)

0.877

(0.650)

0.012

(0.027)

-0.002

(0.024)

0.294*

(0.129)

-0.239*

(0.103)

GRB10_p.A5394141C

GRB10/BTA4

A→C

-2.044

(1.529)

-0.453

(1.191)

0.004

(0.049)

0.071

(0.043)

0.435*

(0.216)

-0.052

(0.171)

rs43375833

GRB10/BTA4

C→T

-0.333

(0.641)

0.623

(0.498)

0.047*

(0.021)

0.002

(0.018)

-0.113

(0.097)

0.171*

(0.078)

rs42575466

ZNF215/BTA15

A→G

2.118

(1.294)

1.394

(0.996)

-0.071

(0.042)

-0.020

(0.037)

0.506*

(0.217)

-0.180

(2.584)

rs42575474

ZNF215/BTA15

A→G

1.882**

(0.648)

1.168*

(0.503)

0.0174

(0.021)

-0.030

(0.018)

0.290**

(0.095)

1.805

(1.183)

PEG3_p.A64370595G

PEG3/BTA18

A→G

-0.065

(0.644)

-0.257

(0.500)

0.006

(0.021)

-0.030

(0.018)

0.009

(0.091)

-0.045

(0.073)

PEG3_p.C64367437T

PEG3/BTA18

C→T

0.180

(0.643)

0.095

(0.499)

-0.024

(0.021)

0.023

(0.018)

0.028

(0.090)

0.018

(1.145)

rs17871322

PEG3/BTA18

A→G

-0.624

(0.648)

-0.490

(0.505)

0.032

(0.021)

-0.005

(0.018)

-0.075

(0.091)

0.044

(1.138)

rs41899915

ZIM2/BTA18

C→G

0.104

(0.767)

-0.331

(0.596)

-0.020

(0.025)

-0.011

(0.022)

-0.081

(0.106)

0.987

(1.295)

rs41899913

ZIM2/BTA18

C→G

0.131

(0.832)

0.332

(0.651)

-0.013

(0.027)

0.006

(0.024)

0.244*

(0.112)

0.636

(1.409)

rs41899911

ZIM2/BTA18

C→T

0.120

(0.766)

-0.321

(0.596)

-0.024

(0.025)

-0.010

(0.022)

-0.059

(0.106)

0.946

(1.291)

rs41899910

ZIM2/BTA18

C→T

0.527

(0.685)

0.101

(0.531)

0.015

(0.022)

-0.005

(0.019)

0.121

(0.096)

-0.891

(1.158)

RASGRF1_p.C25039690T

RASGRF1/BTA21

A→G

-0.375

(0.584)

0.414

(0.459)

0.035†

(0.019)

0.003

(0.017)

-0.154

(0.085)

-1.540

(1.056)

rs42194502

PHLDA2/BTA29

A→T

0.064

(0.975)

-0.322

(0.762)

-0.018

(0.032)

0.007

(0.027)

0.026

(0.135)

0.178

(1.678)

rs42637579

TSPAN32/BTA29

A→G

-0.076

(0.642)

-0.504

(0.504)

-0.023

(0.021)

0.015

(0.018)

0.100

(0.090)

0.499

(1.130)

rs42637578

TSPAN32/BTA29

C→T

1.918

(1.147)

0.757

(0.899)

0.031

(0.038)

-0.054

(0.039)

-0.022

(0.172)

-1.055

(2.076)


Standard errors for each trait are shown in parentheses. Levels of significance: P ≤ 0.10; *P ≤ 0.05; **P ≤ 0.01. Progeny carcass fat score and progeny carcass conformation score are shown on a scale of 1.00 (low) to 15.00 (high) according to Hickey et al. [97]. 1 A value of 1 equates to 1 percentage unit. 2 Expressed in genetic standard deviations.

Magee et al. BMC Genetics 2010 11:93   doi:10.1186/1471-2156-11-93

Open Data