Table 3

Correlation coefficient between FBAT and LME statistics based on 10,000 replicates of no SNP association with a continuous phenotype (marginal phenotype distribution follows the standard normal distribution).

Correlation of FBAT and LME statistics at LME p-value level

MAF

Polygenic Variance

<.01

[.01-.05)

[.05-.1)

[.1-.2)

[.2-.3)

>.3

0.01

0.3

0.89

0.82

0.77

0.68

0.61

0.35

0.01

0.6

0.91

0.83

0.79

0.69

0.63

0.36

0.05

0.3

0.87

0.81

0.75

0.71

0.61

0.34

0.05

0.6

0.89

0.84

0.76

0.72

0.64

0.36

0.1

0.3

0.90

0.81

0.77

0.70

0.60

0.34

0.1

0.6

0.90

0.83

0.79

0.73

0.63

0.36

Chen et al. BMC Genetics 2010 11:40   doi:10.1186/1471-2156-11-40