Table 1 |
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|
Polymorphisms in PPARD |
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| dbSNP number |
Variant |
Localisation |
Predicted function |
|
|
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| ss161109991 |
SNP |
Promoter |
unknown |
| ss161109992 |
SNP |
Promoter |
unknown |
| ss161109993 |
SNP |
Promoter |
unknown |
| ss161109994 |
SNP |
Promoter |
unknown |
| ss161109995 |
SNP |
Promoter |
affects putative ETS-domain TFBS |
| ss161109996 |
SNP |
Intron 1 |
unknown |
| ss161109997 |
SNP |
Exon 2 (5' UTR) |
Minor effect on mRNA structure |
| ss161109998 |
SNP |
Exon 2 (5' UTR) |
Minor effect on mRNA structure |
| ss161109999 |
SNP |
Intron 3 |
unknown |
| ss161110000 |
SNP |
Intron 4 |
unknown |
| ss161110001 |
SNP |
Intron 4 |
unknown |
| ss161110002 |
SNP |
Intron 5 |
unknown |
| ss161110003 |
InDel |
Intron 5 |
unknown |
| ss161110004 |
SNP |
Intron 5 |
unknown |
| ss161110005 |
SNP |
Intron 5 |
unknown |
| ss161110006 |
SNP |
Intron 5 |
unknown |
| ss161110007 |
SNP |
Intron 6 |
unknown |
| ss161110008 |
InDel |
Intron 6 |
unknown |
| ss161110009 |
SNP |
Exon 7 (coding) |
synonymous, minor effect on mRNA structure |
| ss161110010 |
SNP |
Exon 8 (coding) |
synonymous, minor effect on mRNA structure |
| ss161151656 |
SNP |
Exon 8 (3' UTR) |
minor effect on mRNA structure |
| ss161151657 |
SNP |
Exon 8 (3' UTR) |
no effect on mRNA structure |
| ss161151658 |
SNP |
Exon 8 (3' UTR) |
no effect on mRNA structure |
| ss161151659 |
SNP |
Exon 8 (3' UTR) |
minor effect on mRNA structure |
| ss161151660 |
polyC |
Exon 8 (3' UTR) |
minor effect on mRNA structure |
|
|
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|
Meidtner et al. BMC Genetics 2009 10:76 doi:10.1186/1471-2156-10-76 |
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