Additional file 1.

Figure S1. Beagle and Mach showed similar accuracy in imputing missing genotypes. Although we did not apply quality score (QS) filtering, Mach results were still slightly better. We noticed relatively low SNP density on chromosome 19, where imputation was consequently less accurate.

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Hao et al. BMC Genetics 2009 10:27   doi:10.1186/1471-2156-10-27