Figure 4.

Bayesian phylogenetic analyses of DNA replication regulatory proteins. (a) Phylogeny of MCM proteins. Tree shown (consensus of 931 best trees) is based on a phylogeny of 490 amino acids. Parameter means: α = 1.25, pI = 0.03 and lnL = -48902.97. (b) Phylogeny of TIMELESS (TIM-1) and TIMEOUT (TIM-2) proteins. Tree shown (consensus of 951 best trees) is based on an alignment of 491 amino acids. Parameter means: α = 3.77, pI = 0.003 and lnL = -28413.38. (c) Phylogeny of RECQ protein family. Tree shown (consensus of 951 best trees) is based on an alignment of 370 amino acids. Parameter means: α = 1.25, pI = 0.045 and lnL = -34130.50. Blue, red and green taxa names indicate animals, fungi and plants, respectively. Thickened branches refer to posterior probabilities from 0.95 to 1.0. Protein identifiers for D. pulex sequences (in bold) are in Additional File 2.

Schurko et al. BMC Evolutionary Biology 2009 9:78   doi:10.1186/1471-2148-9-78
Download authors' original image