Table 1 |
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Species utilized in this study and the sources of DNA or sequence data |
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Species |
Source |
Sample Identifier |
GenBank ID/Comments |
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Tamandua mexicana (Anteater, Tamandua) |
Leona Chemnick, Beckman Center for Conservations Research/CRES |
KB12462 |
GenBank:FJ204923 |
|
Myrmecophaga tridactyla (Anteater, Giant) |
Leona Chemnick, Beckman Center for Conservations Research/CRES |
OR831 |
GenBank:FJ204926 |
|
Dasypus novemcinctus (Armadillo) |
American Type Culture Collection |
CRL-6009, Trachea cells |
GenBank:FJ204896 |
|
Myotis austroriparius (Bat) |
David A. Ray, Dept of Biology, West Virginia University, |
Maus M8133 or M8135 |
No sequence obtained |
|
Felis catus (Cat) |
Novagen |
69235 |
GenBank:FJ204897 GenBank:FJ204898 |
|
Pan troglodytes (Chimpanzee) |
Coriell Cell Repositories, Coriell Institute for Medical Research |
NA03448 |
GenBank:FJ20489 GenBank:FJ204900 |
|
Bos taurus (Cow) |
Novagen |
69231 |
GenBank:FJ204901 GenBank:FJ204902 |
|
Odocoileus virginianus (Deer) |
Highlands Land Association, Fort Hill, PA |
7X57-139 gr |
GenBank:FJ204903 |
|
Canis lupus familiaris (Dog) |
Novagen |
69234 |
GenBank:FJ204904 |
|
Tursiops truncatus (Dolphin, Bottlenose) |
Southwest Fisheries Science Center, La Jolla, CA |
Z 57948, MBB1 |
GenBank:FJ204927 |
|
Delphinus delphis (Dolphin, Short-Beaked Common) |
Southwest Fisheries Science Center, La Jolla, CA |
Z 23148 |
GenBank:FJ204905 GenBank:FJ204906 |
|
Tachyglossus aceleatus (Echidna) |
Frank Grützner, School of Molecular & Biomed. Sci., Univ. Adelaide, Australia |
No sequence obtained |
|
|
Loxodonta africana (Elephant, African) |
Stergios-Orestis Kolokotronis, American Museum of Natural History, NY, NY |
AR11-105098 |
GenBank:FJ204909 GenBank:FJ204910 |
|
Elephas maximus (Elephant, Asian) |
Stergios-Orestis Kolokotronis, American Museum of Natural History, NY, NY |
AR9-105095 |
GenBank:FJ204907 GenBank:FJ204908 |
|
Gorilla gorilla (Gorilla) |
Coriell Cell Repositories, Coriell Institute for Medical Research |
NG05251 |
GenBank:FJ204911 GenBank:FJ204912 |
|
Cavia porcellus (Guinea Pig) |
Pamela Gehron Robey, NIDCR, NIH, Bethesda, MD |
bone marrow stromal cells, P8 |
GenBank:FJ204913 |
|
Erinacaeus concolor (Hedgehog, Eastern) |
Godfrey M. Hewitt, University of East Anglia, Norwich, UK |
No sequence obtained |
|
|
Erinacaeus europeus (Hedgehog, European) |
Godfrey M. Hewitt, University of East Anglia, Norwich, UK |
No sequence obtained |
|
|
Equus caballus (Horse) |
Roger Smith & Jayesh Dudhia, The Royal Veterinary College, London, UK |
UCSC Genome Browser, Sep 2007, equCab2 |
|
|
Homo sapiens (Human) |
GenBank |
NM_014208 |
|
|
Dipodomys ordii (Kangaroo Rat) |
UCSC Genome Browser |
Jul 2008, dipOrd1 |
|
|
Lemur catta (Lemur) |
Coriell Cell Repositories, Coriell Institute for Medical Research |
NA7099 |
GenBank:FJ204914 |
|
Mammuthus primigenius (Mammoth) |
Mammoth Genome Project, PSU |
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|
Trichechus manatus latirostris (Manatee) |
Robert K. Bonde, U.S. Geological Survey, Florida Integrated Sci. Center |
CCR-007-009, 10, 11 |
GenBank:FJ204915 GenBank:FJ204916 |
|
Callithrix jacchus (Marmoset) |
UCSC Genome Browser |
June 2007, calJac1 |
|
|
Mus musculus (Mouse) |
GenBank |
NC_000071 |
|
|
Monodelphis domestica (Opossum, Gray short-tailed) |
UCSC Genome Browser |
Jan 2006, monDom4 |
|
|
Didelphis marsupialis virginiana (Opossum, Virginia) |
American Type Culture Collection |
CRL-1840, cortex kidney cells |
GenBank:FJ204917 |
|
Manis tricuspis (Pangolin) |
Leona Chemnick, Beckman Center for Conservations Research/CRES |
KB16041 |
No sequence obtained |
|
Sus scrofa (Pig) |
Novagen |
69230 |
GenBank:FJ204919 |
|
Ornithorhynchus anatinus (Platypus) |
Frank Grützner, School of Molecular & Biomed. Sci., Univ. Adelaide, Australia |
GenBank:FJ204918 |
|
|
Oryctolagus cuniculus (Rabbit) |
Pamela Gehron Robey, NIDCR, NIH, Bethesda, MD |
bone marrow stromal cells, P5 |
GenBank:FJ204920 |
|
Rattus norvegicus (Rat) |
GenBank |
NM_012790 |
|
|
Macaca mulatta (Rhesus Macaque) |
UCSC Genome Browser |
Jan 2006, rheMac2 |
|
|
Blarina brevicauda (Shrew, Northern short-tailed) |
Mr. Jack Hubley, Lititz, PA |
No sequence obtained |
|
|
Sorex araneus (Shrew, Common) |
UCSC Genome Browser |
June 2006, sorAra1 |
|
|
Sorex ornatus (Shrew, Ornate) |
Leona Chemnick, Beckman Center for Conservations Research/CRES |
KB13763 |
No sequence obtained |
|
Ateles geoffroyi (Spider Monkey) |
Coriell Cell Repositories, Coriell Institute for Medical Research |
NG05352 |
GenBank:FJ204922 |
|
Spermophilus tridecemlineatus (Squirrel) |
UCSC Genome Browser |
Feb 2008, speTri1 |
|
|
Tarsier syrichta (Tarsier) |
UCSC Genome Browser |
Aug 2008, tarSyr1 |
|
|
Balaena mysticetus (Whale, Bowhead (baleen)) |
Southwest Fisheries Science Center, La Jolla, CA |
Z 11215, BMYS981022 |
GenBank:FJ204924 GenBank:FJ204925 |
|
Balaenoptera physalus (Whale, Fin) |
Southwest Fisheries Science Center, La Jolla, CA |
Z 25397, DSJ010903.01 |
No sequence obtained |
|
Physeter macrocephalus (Whale, Sperm) |
Southwest Fisheries Science Center, La Jolla, CA |
Z 49068, MAC050820.05 |
No sequence obtained |
|
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McKnight and Fisher BMC Evolutionary Biology 2009 9:299 doi:10.1186/1471-2148-9-299 |
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