Systematic analysis of insertions and deletions specific to nematode proteins and their proposed functional and evolutionary relevance

doi:10.1186/1471-2148-9-23

BMC Evolutionary Biology
Volume 9

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Gasser RB
Mitreva M

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Research article

Systematic analysis of insertions and deletions specific to nematode proteins and their proposed functional and evolutionary relevance

Zhengyuan Wang¹ , John Martin¹ , Sahar Abubucker¹ , Yong Yin¹ , Robin B Gasser² and Makedonka Mitreva¹

¹The Genome Center, Department of Genetics, Washington University School of Medicine, St Louis, MO 63110, USA

²Department of Veterinary Science, The University of Melbourne, Werribee, VIC 3030, Australia

author email corresponding author email

BMC Evolutionary Biology 2009, 9:23doi:10.1186/1471-2148-9-23


Published:	28 January 2009

Additional files

Additional file 1:

Panther based classification of proteins bearing nematode specific indels. The data provided represent summary of the functional classification of the proteins bearing nematode specific indels based on the Panther protein classification system.

Format: XLS Size: 70KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 2:

KEGG based classification of proteins bearing nematode specific indels. The data provided represent summary of the pathway associations of the proteins bearing nematode specific indels based on the KEGG pathway information.

Format: XLS Size: 390KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 3:

Rates of insertions and deletions of proteins involved in single or multiple pathways. The data provided are the rates in terms of the number of insertions or deletions within the proteins involved in single or multiple pathways by the numbers of protein families.

Format: XLS Size: 14KB Download file

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Additional file 4:

Sizeable indels (> 4 aa) in proteins involved in cellular pathways (classification based on KEGG). Summary of the identified indels within proteins involved in cellular pathways. Only indels with ≥ 4 aa are considered.

Format: XLS Size: 18KB Download file

This file can be viewed with: Microsoft Excel Viewer