Table 5

Sequences used for phylogenetic analysis and substitution rate calculations

Strain

Chromosomal locus and GenBank RefSeq accession number

aaxA

aaxB

aaxC

Chlamydia abortus S26/3¹

CAB696

[YP_220094.1]

CAB697

[YP_220095.1]

CAB698

[YP_220096.1]

Chlamydia caviae GPIC¹

CCA00729

[NP_829592.1]

CCA00730

[NP_829593.1]

CCA00731

[NP_829594.1]

Chlamydia felis

Fe/C-56¹

CF0287

[YP_515204.1]

CF0286

[YP_515203.1]

CF0285

[YP_515202.1]

Chlamydia muridarum Nigg

TC0651

[NP_297025.1]

TC0652

[NP_297026.1]

TC0653

[NP_297027.1]

Chlamydia pneumoniae CWL029¹

CPn1033

[NP_225227.1]

CPn1032

[NP_225226.1]

CPn1031

[NP_225225.1]

Chlamydia trachomatis A/HAR-13

CTA_0404

[YP_328186.1]

CTA_0405

[YP_328187.1]

(CTA_0406)³

Chlamydia trachomatis B/Jali

NA²

NA²

NA^2,3

Chlamydia trachomatis D/UW-3

CT372

[NP_219881.1]

CT373

[NP_219882.1]

CT374

[NP_219883.1]

Chlamydia trachomatis L2/434

CTL0626

[YP_001654701.1]

(CTL0627)³

CTL0628

[YP_001654702.1]

Chlamydia trachomatis L2b/UCH

CTLon_0624

[YP_001653713.1]

(CTLon_0625)³

CTLon_0626

[YP_001653714.1]

¹ These species are sometimes considered part of the Chlamydophila genus.

² Not available. The unannotated C. trachomatis B/Jali genome sequence was retrieved from the Sanger Institute website http://www.sanger.ac.uk/Projects/C_trachomatis/ webcite.

³ The aaxB pseudogenes in LGV strains and the aaxC pseudogenes in C. trachomatis HAR-13 and Jali strains were not assigned GenBank accession numbers.

Giles et al. BMC Evolutionary Biology 2009 9:166   doi:10.1186/1471-2148-9-166