Table 2 |
||||
|
Information on sequence alignments of the different datasets and models of sequence evolution for Bayesian analyses |
||||
|
Gene region and taxon set |
Number of taxa |
Length of alignment (after removal of ambiguous positions) |
Excluded nucleotide positions |
Model of sequence evolution |
|
|
||||
|
18S rRNA (large taxon set) |
53 |
1843 |
228–302 |
TRN+I+G |
|
773–1044 |
α = 0.3539 |
|||
|
1500–1523 |
pinv = 0.3977 |
|||
|
1777–1990 |
||||
|
|
||||
|
18S rRNA (reduced taxon set) |
34 |
1826 |
228–302 |
TRN+I+G |
|
766–1037 |
α = 0.3202 |
|||
|
1490–1513 |
pinv = 0.4220 |
|||
|
1750–1977 |
||||
|
|
||||
|
28S rRNA (large taxon set) |
52 |
1123 |
540–565 |
GTR+I+G |
|
656–712 |
α = 0.5337 |
|||
|
1076–1125 |
pinv = 0.2449 |
|||
|
|
||||
|
28S rRNA (reduced taxon set) |
34 |
1099 |
543–562 |
GTR+I+G |
|
675–726 |
α = 0.3905 |
|||
|
1052–1074 |
pinv = 0.0889 |
|||
|
|
||||
|
16S rRNA (large taxon set) |
49 |
452 |
318–450 |
HKY+I+G |
|
486–587 |
α = 0.6450 |
|||
|
664–681 |
pinv = 0.2421 |
|||
|
|
||||
|
16S rRNA (reduced taxon set) |
34 |
452 |
318–450 |
K81uf+I+G |
|
486–587 |
α = 0.5878 |
|||
|
664–681 |
pinv = 0.2173 |
|||
|
|
||||
|
CO1 (large taxon set) |
47 |
597 |
GTR+I+G |
|
|
α = 0.4170 |
||||
|
pinv = 0.2722 |
||||
|
|
||||
|
CO1 (reduced taxon set) |
34 |
597 |
GTR+I+G |
|
|
α = 0.3975 |
||||
|
pinv = 0.3077 |
||||
|
|
||||
|
CO1 (without 3rd codon position) (large taxon set) |
47 |
400 |
3rd codon positions |
TIM+I+G |
|
α = 0.3496 |
||||
|
pinv = 0.3879 |
||||
|
|
||||
|
CO1 (without 3rd codon position) (reduced taxon set) |
34 |
400 |
3rd codon positions |
TIM+I+G |
|
α = 0.3435 |
||||
|
pinv = 0.4759 |
||||
|
|
||||
|
Klussmann-Kolb et al. BMC Evolutionary Biology 2008 8:57 doi:10.1186/1471-2148-8-57 |
||||
