Table 1 |
||||
|
List of sequences included in the phylogenetic analyses. |
||||
|
Assignment |
Organisms |
Accession number |
Reference |
|
|
|
||||
|
L-LDH EC 1.1.1.27 |
||||
|
LDH |
Aedes aegypti |
yellow fever mosquito |
[Swiss-Prot:Q16ND1] |
[43] |
|
LDH-A |
Alligator mississippiensis |
American alligator |
[Swiss-Prot:Q9PW06] |
[13] |
|
LDH-B |
Alligator mississippiensis |
American alligator |
[Swiss-Prot:Q9PW05] |
[13] |
|
LDH |
Anopheles gambiae |
African malaria mosquito |
[Swiss-Prot:Q7Q981] |
[44] |
|
LDH |
Arabidopsis thaliana |
mouse-ear cress |
[Swiss-Prot:O49191] |
Dolferus et al. 1998 unpublished |
|
LDH |
Caenorhabditis briggsae |
nematode |
[Swiss-Prot:Q61ZF2] |
[45] |
|
LDH |
Caenorhabditis elegans |
nematode |
[Swiss-Prot:Q27888] |
[46] |
|
LDH |
Capitella capitata |
segmented worm |
gi 134102 |
unpublished |
|
LDH |
Carcinus maenas |
green crab |
[Swiss-Prot:DY308423] |
[47] |
|
LDH-B |
Chelodina siebenrocki |
turtle |
[Swiss-Prot:Q6S5M2] |
Ho and Li 2003 unpublished |
|
LDH |
Ciona intestinalis |
tunicate |
gi 149293 |
unpublished |
|
LDH-A |
Cyprinus carpio |
common carp |
[Swiss-Prot:Q9W7K5] |
Tsoi et al. 1998 unpublished |
|
LDH |
Clonorchis sinensis |
flatworm |
gi 56131044 |
unpublished |
|
LDH-A |
Danio rerio |
zebrafish |
[Swiss-Prot:Q9PVK5] |
Tsoi et al. 1998 unpublished |
|
LDH-B |
Danio rerio |
zebrafish |
[Swiss-Prot:Q9PVK4] |
Tsoi et al. 1998 unpublished |
|
LDH-A |
Daphnia pulex |
water flea |
gi 230172 |
unpublished |
|
LDH-B |
Daphnia pulex |
water flea |
gi 61140 |
unpublished |
|
LDH |
Drosophila melanogaster |
fruit fly |
[Swiss-Prot:Q95028] |
[48] |
|
LDH |
Drosophila pseudoobscura |
fruit fly |
[Swiss-Prot:Q29FH9] |
[49] |
|
LDH-A |
Fundulus heteroclitus |
killifish |
[Swiss-Prot:Q92055] |
[50] |
|
LDH-B |
Fundulus heteroclitus |
killifish |
[Swiss-Prot:P20373] |
[9] |
|
LDH-C |
Fundulus heteroclitus |
killifish |
[Swiss-Prot:Q06176] |
[51] |
|
LDH-A |
Gallus gallus |
chicken |
[Swiss-Prot:P00340] |
[52] |
|
LDH-B |
Gallus gallus |
chicken |
[Swiss-Prot:P00337] |
Tsoi et al. 1998 unpublished |
|
LDH-A |
Helobdella robusta |
segmented worm |
gi 115469 |
unpublished |
|
LDH-B |
Helobdella robusta |
segmented worm |
gi 156879 |
unpublished |
|
LDH-C |
Helobdella robusta |
segmented worm |
gi 166102 |
unpublished |
|
LDH-A |
Homo sapiens |
human |
[Swiss-Prot:P00338] |
[53] |
|
LDH-B |
Homo sapiens |
human |
[Swiss-Prot:P07195] |
[54] |
|
LDH-C |
Homo sapiens |
human |
[Swiss-Prot:P07864] |
[55] |
|
LDH-A |
Hordeum vulgare |
barley |
[Swiss-Prot:P22988] |
[20] |
|
LDH-B |
Hordeum vulgare |
barley |
[Swiss-Prot:P22989] |
[20] |
|
LDH |
Litomosoides sigmodontis |
nematode |
[GenBank:DN558179] |
Gregory W. 1995 unpublished |
|
LDH-A |
Monodelphis domestica |
gray short-tailed opossum |
[Swiss-Prot:Q9XT87] |
Tsoi et al. 1998 unpublished |
|
LDH-B |
Monodelphis domestica |
gray short-tailed opossum |
[Swiss-Prot:Q9XT86] |
Tsoi et al. 1998 unpublished |
|
LDH-A |
Mus musculus |
house mouse |
[Swiss-Prot:P06151] |
[56] |
|
LDH-B |
Mus musculus |
house mouse |
[Swiss-Prot:P16125] |
[57] |
|
LDH-C |
Mus musculus |
house mouse |
[Swiss-Prot:P00342] |
[58] |
|
LDH |
Petrolisthes cinctipes |
flat porcelain crab |
[35] |
|
|
LDH |
Petromyzon marinus |
sea lamprey |
[Swiss-Prot:P33571] |
[10] |
|
LDH-A |
Squalus acanthias |
spiny dogfish |
[Swiss-Prot:P00341] |
[59] |
|
LDH-B |
Squalus acanthias |
spiny dogfish |
[Swiss-Prot:Q9YI05] |
[60] |
|
LDH |
Strongylocentrotus purpuratus |
purple urchin |
[GenBank:XP_001196488] |
unpublished |
|
LDH |
Styela plicata |
tunicate |
[Swiss-Prot:O44340] |
[7] |
|
LDH |
Tribolium castaneum |
red flour beetle |
[GeneBank:XM_963110] |
unpublished |
|
LDH-A |
Xenopus laevis |
African clawed frog |
[Swiss-Prot:P42120] |
[11] |
|
LDH-B |
Xenopus laevis |
African clawed frog |
[Swiss-Prot:P42119] |
[11] |
|
LDH-C |
Xenopus laevis |
African clawed frog |
[Swiss-Prot:P42121] |
[11] |
|
LDH |
Zea mays |
maize |
[Swiss-Prot:P29038] |
[61] |
|
D-LDH EC 1.1.2.4 |
||||
|
Arabidopsis thaliana |
mouse-ear cress |
[GeneBank:NM_120741] |
unpublished |
|
|
Bos taurus |
cattle |
[Swiss-Prot:Q148K4] |
Moore et al. 2006 unpublished |
|
|
Caenorhabditis elegans |
nematode |
[GeneBank:NP_001023872] |
unpublished |
|
|
DLD1 |
Candida sphaerica |
yeast |
[Swiss-Prot:Q12627] |
[62] |
|
Canis familiaris |
dog |
[GeneBank:XP_852976] |
unpublished |
|
|
Ciona intestinalis |
tunicate |
gi: 289925 |
unpublished |
|
|
Capitella capitata |
segmented worm |
gi: 177524 |
unpublished |
|
|
Danio rerio |
zebrafish |
[GeneBank:NP_956157] |
[63] |
|
|
Daphnia pulex |
water flea |
gi: 302238 |
unpublished |
|
|
Lottia gigantea |
gastropod |
gi: 229861 |
unpublished |
|
|
Helobdella robusta |
segmented worm |
gi: 185793 |
unpublished |
|
|
Homo sapiens |
human |
[Swiss-Prot:Q86WU2] |
[5] |
|
|
Monodelphis domestica |
gray short-tailed opossum |
[GeneBank:XP_001375142] |
unpublished |
|
|
Mus musculus |
house mouse |
[Swiss-Prot:Q7TNG8] |
[5] |
|
|
Nematostella vectensis |
starlet sea anemone |
[GeneBank:XP_001626025] |
unpublished |
|
|
Pan troglodytes |
chimpanzee |
[GeneBank:XP_001139010] |
unpublished |
|
|
Rattus norvegicus |
Norway rat |
[Swiss-Prot:Q7TPJ4] |
Xu et al. 2003 unpublished |
|
|
DLD1 |
Saccharomyces cerevisiae |
baker's yeast |
[Swiss-Prot:YDL174C] |
[64] |
|
Strongylocentrotus purpuratus |
purple urchin |
[GeneBank:XP_796456] |
unpublished |
|
|
Tetraodon nigroviridis |
Green puffer |
[Swiss-Prot:Q4T6R2] |
[65] |
|
|
Xenopus laevis |
African clawed frog |
[Swiss-Prot:A1L2R0] |
[66] |
|
|
|
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|
Cristescu et al. BMC Evolutionary Biology 2008 8:268 doi:10.1186/1471-2148-8-268 |
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