Table 1

List of sequences included in the phylogenetic analyses.

Assignment

Organisms

Accession number

Reference


L-LDH

EC 1.1.1.27

LDH

Aedes aegypti

yellow fever mosquito

[Swiss-Prot:Q16ND1]

[43]

LDH-A

Alligator mississippiensis

American alligator

[Swiss-Prot:Q9PW06]

[13]

LDH-B

Alligator mississippiensis

American alligator

[Swiss-Prot:Q9PW05]

[13]

LDH

Anopheles gambiae

African malaria mosquito

[Swiss-Prot:Q7Q981]

[44]

LDH

Arabidopsis thaliana

mouse-ear cress

[Swiss-Prot:O49191]

Dolferus et al. 1998 unpublished

LDH

Caenorhabditis briggsae

nematode

[Swiss-Prot:Q61ZF2]

[45]

LDH

Caenorhabditis elegans

nematode

[Swiss-Prot:Q27888]

[46]

LDH

Capitella capitata

segmented worm

gi 134102

unpublished

LDH

Carcinus maenas

green crab

[Swiss-Prot:DY308423]

[47]

LDH-B

Chelodina siebenrocki

turtle

[Swiss-Prot:Q6S5M2]

Ho and Li 2003 unpublished

LDH

Ciona intestinalis

tunicate

gi 149293

unpublished

LDH-A

Cyprinus carpio

common carp

[Swiss-Prot:Q9W7K5]

Tsoi et al. 1998 unpublished

LDH

Clonorchis sinensis

flatworm

gi 56131044

unpublished

LDH-A

Danio rerio

zebrafish

[Swiss-Prot:Q9PVK5]

Tsoi et al. 1998 unpublished

LDH-B

Danio rerio

zebrafish

[Swiss-Prot:Q9PVK4]

Tsoi et al. 1998 unpublished

LDH-A

Daphnia pulex

water flea

gi 230172

unpublished

LDH-B

Daphnia pulex

water flea

gi 61140

unpublished

LDH

Drosophila melanogaster

fruit fly

[Swiss-Prot:Q95028]

[48]

LDH

Drosophila pseudoobscura

fruit fly

[Swiss-Prot:Q29FH9]

[49]

LDH-A

Fundulus heteroclitus

killifish

[Swiss-Prot:Q92055]

[50]

LDH-B

Fundulus heteroclitus

killifish

[Swiss-Prot:P20373]

[9]

LDH-C

Fundulus heteroclitus

killifish

[Swiss-Prot:Q06176]

[51]

LDH-A

Gallus gallus

chicken

[Swiss-Prot:P00340]

[52]

LDH-B

Gallus gallus

chicken

[Swiss-Prot:P00337]

Tsoi et al. 1998 unpublished

LDH-A

Helobdella robusta

segmented worm

gi 115469

unpublished

LDH-B

Helobdella robusta

segmented worm

gi 156879

unpublished

LDH-C

Helobdella robusta

segmented worm

gi 166102

unpublished

LDH-A

Homo sapiens

human

[Swiss-Prot:P00338]

[53]

LDH-B

Homo sapiens

human

[Swiss-Prot:P07195]

[54]

LDH-C

Homo sapiens

human

[Swiss-Prot:P07864]

[55]

LDH-A

Hordeum vulgare

barley

[Swiss-Prot:P22988]

[20]

LDH-B

Hordeum vulgare

barley

[Swiss-Prot:P22989]

[20]

LDH

Litomosoides sigmodontis

nematode

[GenBank:DN558179]

Gregory W. 1995 unpublished

LDH-A

Monodelphis domestica

gray short-tailed opossum

[Swiss-Prot:Q9XT87]

Tsoi et al. 1998 unpublished

LDH-B

Monodelphis domestica

gray short-tailed opossum

[Swiss-Prot:Q9XT86]

Tsoi et al. 1998 unpublished

LDH-A

Mus musculus

house mouse

[Swiss-Prot:P06151]

[56]

LDH-B

Mus musculus

house mouse

[Swiss-Prot:P16125]

[57]

LDH-C

Mus musculus

house mouse

[Swiss-Prot:P00342]

[58]

LDH

Petrolisthes cinctipes

flat porcelain crab

[GenBank:FE768558FE768559]

[35]

LDH

Petromyzon marinus

sea lamprey

[Swiss-Prot:P33571]

[10]

LDH-A

Squalus acanthias

spiny dogfish

[Swiss-Prot:P00341]

[59]

LDH-B

Squalus acanthias

spiny dogfish

[Swiss-Prot:Q9YI05]

[60]

LDH

Strongylocentrotus purpuratus

purple urchin

[GenBank:XP_001196488]

unpublished

LDH

Styela plicata

tunicate

[Swiss-Prot:O44340]

[7]

LDH

Tribolium castaneum

red flour beetle

[GeneBank:XM_963110]

unpublished

LDH-A

Xenopus laevis

African clawed frog

[Swiss-Prot:P42120]

[11]

LDH-B

Xenopus laevis

African clawed frog

[Swiss-Prot:P42119]

[11]

LDH-C

Xenopus laevis

African clawed frog

[Swiss-Prot:P42121]

[11]

LDH

Zea mays

maize

[Swiss-Prot:P29038]

[61]

D-LDH EC

1.1.2.4

Arabidopsis thaliana

mouse-ear cress

[GeneBank:NM_120741]

unpublished

Bos taurus

cattle

[Swiss-Prot:Q148K4]

Moore et al. 2006 unpublished

Caenorhabditis elegans

nematode

[GeneBank:NP_001023872]

unpublished

DLD1

Candida sphaerica

yeast

[Swiss-Prot:Q12627]

[62]

Canis familiaris

dog

[GeneBank:XP_852976]

unpublished

Ciona intestinalis

tunicate

gi: 289925

unpublished

Capitella capitata

segmented worm

gi: 177524

unpublished

Danio rerio

zebrafish

[GeneBank:NP_956157]

[63]

Daphnia pulex

water flea

gi: 302238

unpublished

Lottia gigantea

gastropod

gi: 229861

unpublished

Helobdella robusta

segmented worm

gi: 185793

unpublished

Homo sapiens

human

[Swiss-Prot:Q86WU2]

[5]

Monodelphis domestica

gray short-tailed opossum

[GeneBank:XP_001375142]

unpublished

Mus musculus

house mouse

[Swiss-Prot:Q7TNG8]

[5]

Nematostella vectensis

starlet sea anemone

[GeneBank:XP_001626025]

unpublished

Pan troglodytes

chimpanzee

[GeneBank:XP_001139010]

unpublished

Rattus norvegicus

Norway rat

[Swiss-Prot:Q7TPJ4]

Xu et al. 2003 unpublished

DLD1

Saccharomyces cerevisiae

baker's yeast

[Swiss-Prot:YDL174C]

[64]

Strongylocentrotus purpuratus

purple urchin

[GeneBank:XP_796456]

unpublished

Tetraodon nigroviridis

Green puffer

[Swiss-Prot:Q4T6R2]

[65]

Xenopus laevis

African clawed frog

[Swiss-Prot:A1L2R0]

[66]


Cristescu et al. BMC Evolutionary Biology 2008 8:268   doi:10.1186/1471-2148-8-268

Open Data