|
Similarity of predicted structures for species pairs. |
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| Species comparison |
Prediction Method |
(P+U)/all |
P/all |
U/all |
|
|
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| Genes shorter than 800 bp |
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|
|
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| Across all 4 yeasts |
MFE |
27% ± 0.6 |
17% ± 0.3 |
10% ± 0.5 |
| Mc |
27% ± 0.4 |
9% ± 0.2 |
18% ± 0.3 |
|
| S. cerevisiae – S. paravensis |
MFE |
63% ± 0.6 |
36% ± 0.3 |
27% ± 0.3 |
| Mc |
64% ± 0.5 |
22% ± 0.4 |
42% ± 0.5 |
|
| S. cerevisiae – S. mikitae |
MFE |
59% ± 0.3 |
34% ± 0.2 |
25% ± 0.2 |
| Mc |
61% ± 0.4 |
20% ± 0.4 |
41% ± 0.6 |
|
| S. cerevisiae – S. bayanus |
MFE |
42% ± 0.4 |
23% ± 0.5 |
19% ± 0.1 |
| Mc |
59% ± 0.3 |
20% ± 0.0 |
40% ± 0.5 |
|
|
|
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| All genes |
||||
|
|
||||
| Across all 4 yeasts |
MFE |
25% ± 0.3 |
8% ± 0.1 |
16% ± 0.2 |
| Mc |
25% ± 0.4 |
16% ± 0.2 |
9% ± 0.1 |
|
| S. cerevisiae – S. paravensis |
MFE |
61% ± 0.4 |
36% ± 0.2 |
25% ± 0.2 |
| Mc |
63% ± 0.3 |
22% ± 0.3 |
41% ± 0.4 |
|
| S. cerevisiae – S. mikitae |
MFE |
58% ± 0.2 |
35% ± 0.2 |
23% ± 0.1 |
| Mc |
60% ± 0.3 |
20% ± 0.3 |
40% ± 0.4 |
|
| S. cerevisiae – S. bayanus |
MFE |
57% ± 0.2 |
34% ± 0.1 |
23% ± 0.1 |
| Mc |
58% ± 0.2 |
20% ± 0.2 |
39% ± 0.4 |
|
|
The average percentages of sites (± variances) unambiguously predicted to be paired (P/all) and/or unpaired ((P+U)/all, U/all) for the respective species comparison using RNAfold MFE and McCaskill's (Mc) algorithm are presented. | ||||
Stoletzki BMC Evolutionary Biology 2008 8:224 doi:10.1186/1471-2148-8-224 |
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