Table 3 |
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|
Posterior estimates of divergence times. |
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|
Node |
Unpartitioned |
Partitioned |
||||
|
|
|
|||||
|
BEAST |
mcmctree |
mcmctree |
||||
|
|
|
|
|
|||
|
Mean |
95% HPD |
Mean |
95% HPD |
Mean |
95% HPD |
|
|
|
||||||
|
t1 |
35.69 |
26.55–46.51 |
36.59 |
30.71–42.63 |
36.49 |
31.20–47.40 |
|
t2 |
19.09 |
14.38–24.79 |
22.05 |
18.37–25.57 |
17.88 |
15.13–23.23 |
|
t3 |
12.86 |
9.77–16.58 |
15.57 |
12.93–17.99 |
12.36 |
10.44–15.97 |
|
t4 |
5.39 |
4.20–6.86 |
6.31 |
5.23–7.14 |
4.88 |
4.17–6.37 |
|
t5 |
5.05 |
3.90–6.48 |
5.80 |
4.81–6.64 |
4.55 |
3.85–5.99 |
|
t6 |
2.75 |
2.10–3.57 |
3.11 |
2.55–3.63 |
2.41 |
2.01–3.23 |
|
t7 |
0.88 |
0.66–1.17 |
0.97 |
0.78–1.16 |
0.75 |
0.61–1.00 |
|
t8 |
4.58 |
3.51–5.89 |
5.31 |
4.39–6.11 |
4.11 |
3.44–5.38 |
|
t9 |
4.08 |
3.11–5.27 |
4.69 |
3.86–5.43 |
3.66 |
3.07–4.84 |
|
t10 |
5.66 |
4.26–7.34 |
6.98 |
5.73–8.18 |
5.33 |
4.43–7.00 |
|
rate |
1.199 |
0.896–1.50 |
1.07 |
0.92–1.28 |
AF |
AF |
|
κ |
- |
- |
35.72 |
33.01–38.63 |
AF |
AF |
|
α |
0.155 |
0.146–0.163 |
0.20 |
0.19–0.21 |
AF |
AF |
|
|
||||||
|
The two mcmctree columns correspond to the unpartitioned and partitioned analyses. The divergence time estimates are in millions of years before present. HPD, highest posterior density; rate, evolutionary rate (× 10-8 substitutions/site/year); κ, transition-transversion parameter of the HKY model; α, shape parameter of the rate heterogeneity Γ-distribution. AF, see Additional File 1. |
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|
Krause et al. BMC Evolutionary Biology 2008 8:220 doi:10.1186/1471-2148-8-220 |
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