|
Best model and estimated substitution parameter values. |
||||
| Gene |
Cytochrome b |
IRBP |
GHR |
Combined data |
|
|
||||
| Length (bp) |
1140 |
1233 |
931 |
3304 |
| Best model |
GTR+G+I |
TVM+G+I |
TVM+G+I |
GTR+G+I |
| πA |
0.424 |
0.231 |
0.308 |
0.318 |
| πC |
0.324 |
0.278 |
0.252 |
0.287 |
| πG |
0.029 |
0.267 |
0.198 |
0.180 |
| πT |
0.223 |
0.224 |
0.242 |
0.215 |
| rA-C |
0.036 |
1.321 |
1.011 |
1.867 |
| rA-G |
3.821 |
6.415 |
5.880 |
4.316 |
| rA-T |
0.210 |
0.931 |
0.836 |
3.101 |
| rC-G |
0.251 |
0.621 |
1.376 |
0.632 |
| rC-T |
5.453 |
6.415 |
5.880 |
29.243 |
| rG-T |
1.000 |
1.000 |
1.000 |
1.000 |
| α |
0.475 |
0.918 |
0.640 |
0.290 |
| Pinv |
0.410 |
0.281 |
0.059 |
0.215 |
|
These values were estimated from maximum-likelihood analysis of each gene separately (cytochrome b, IRBP, and GHR, respectively) and of the combined data set. | ||||
Lecompte et al. BMC Evolutionary Biology 2008 8:199 doi:10.1186/1471-2148-8-199 |
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