Broadly sampled multigene trees of eukaryotes

doi:10.1186/1471-2148-8-14

BMC Evolutionary Biology

Volume 8

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Grant J
Tekle YI
Wu M
Chaon BC
Cole JC
Logsdon JM
Patterson DJ
Bhattacharya D
Katz LA

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Grant J
Tekle YI
Wu M
Chaon BC
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Logsdon JM
Patterson DJ
Bhattacharya D
Katz LA
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Research article

Broadly sampled multigene trees of eukaryotes

Hwan Su Yoon¹^,5^* , Jessica Grant²^* , Yonas I Tekle² , Min Wu¹ , Benjamin C Chaon¹ , Jeffrey C Cole³ , John M Logsdon Jr¹ , David J Patterson⁴ , Debashish Bhattacharya¹ and Laura A Katz²

¹Department of Biological Sciences and Center for Comparative Genomics, University of Iowa, Iowa City, Iowa 52242, USA

²Department of Biological Sciences, Smith College, Northampton, MA 01063, USA

³American Type Culture Collection, P.O. Box 1549, Manassas, VA 20108, USA

⁴Marine Biological Laboratory, Woods Hole, MA 02543, USA

⁵Bigelow Laboratory for Ocean Sciences, 180 West Boothbay Harbor, ME 04575, USA

author email corresponding author email* Contributed equally

BMC Evolutionary Biology 2008, 8:14doi:10.1186/1471-2148-8-14


Published:	18 January 2008

Additional files

Additional file 1:

Table 1. Table of taxa sampled and sources of genes.

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Additional file 2:

Figure 4. Likelihood analysis of the 105-taxon data set of SSU-rDNA + nucleotide sequences of actin, alpha-tubulin and beta-tubulin performed with RaxML. See text and Figure 2 for additional notes.

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Additional file 3:

Figure 5. Bayesian analyses of the 105-taxon data set of SSU-rDNA + nucleotide sequences of actin, alpha-tubulin and beta-tubulin performed with MrBayes. See text and Figure 2 for additional notes.

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Additional file 4:

Figure 6. Bayesian analyses of the 105-taxon data set of amino acid sequences of actin, alpha-tubulin and beta-tubulin performed with MrBayes. See text and Figure 2 for additional notes.

Format: PDF Size: 649KB Download file

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Additional file 5:

Figure 7. Likelihood analysis of the 105-taxon data set of amino acid sequences of actin, alpha-tubulin and beta-tubulin performed with PhyML. See text and Figure 2 for additional notes.

Format: PDF Size: 617KB Download file

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Additional file 6:

Figure 8. Likelihood analysis of the 92-taxon data set of SSU-rDNA + nucleotide sequences of actin, alpha-tubulin and beta-tubulin performed with RaxML. See text and Figure 2 for additional notes.

Format: PDF Size: 897KB Download file

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Additional file 7:

Figure 9. Bayesian analyses of the 92-taxon data set of SSU-rDNA + nucleotide sequences of actin, alpha-tubulin and beta-tubulin performed with MrBayes. See text and Figure 2 for additional notes.

Format: PDF Size: 370KB Download file

This file can be viewed with: Adobe Acrobat Reader

Additional file 8:

Figure 10. Bayesian analyses of the 92-taxon data set of amino acid sequences of actin, alpha-tubulin and beta-tubulin performed with MrBayes. See text and Figure 2 for additional notes.

Format: PDF Size: 623KB Download file

This file can be viewed with: Adobe Acrobat Reader

Additional file 9:

Figure 11. Likelihood analysis of the 92-taxon data set of amino acid sequences of actin, alpha-tubulin and beta-tubulin performed with PhyML. See text and Figure 2 for additional notes.

Format: PDF Size: 620KB Download file

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Additional file 10:

Figure 12. Bayesian analysis of 93 actin amino acid sequences that are in the 105 multigene taxon analysis, performed with MrBayes. See text and Figure 2 for additional notes.

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Additional file 11:

Figure 13. Bayesian analysis of 96 alpha-tubulin amino acid sequences that are in the 105 multigene taxon analysis, performed with MrBayes. See text and Figure 2 for additional notes.

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Additional file 12:

Figure 14. Bayesian analysis of 98 beta-tubulin amino acid sequences that are in the 105 multigene taxon analysis, performed with MrBayes. See text and Figure 2 for additional notes.

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