Table 2

Comparison of Relative Divergence Factors calculated using different reference sets of non-gnetophyte seed plants.

Gene

setA

set B

set C

set D

set E

average


All

1.69

1.53

1.67

1.50

1.54

1.59

atpA

1.53

1.36

1.44

1.30

1.32

1.39

atpB

1.57

1.44

1.59

1.37

1.38

1.47

atpE

1.59

1.52

1.63

1.44

1.47

1.53

atpF

1.58

1.32

1.39

1.30

1.33

1.38

atpH

1.40

1.36

1.23

1.42

1.38

1.36

atpI

1.60

1.56

1.64

1.45

1.50

1.55

ccsA

1.68

1.54

1.81

1.49

1.58

1.62

cemA

1.51

1.27

1.51

1.22

1.27

1.36

matK

1.92

1.77

1.91

1.72

1.81

1.83

petA

1.64

1.48

1.68

1.43

1.49

1.54

petB

1.74

1.79

1.83

1.66

1.74

1.75

petD

1.67

1.52

1.65

1.54

1.60

1.60

petG

1.81

1.55

1.95

1.49

1.65

1.69

petN

1.34

1.16

1.16

1.08

1.10

1.17

psaA

1.95

1.35

1.52

1.37

1.38

1.51

psaB

1.53

1.33

1.42

1.36

1.37

1.40

psaC

1.80

1.86

1.96

1.77

1.95

1.87

psaI

2.54

2.03

2.27

2.02

1.95

2.16

psaJ

1.13

0.87

0.93

1.05

0.88

0.97

psbA

1.51

1.32

1.38

1.29

1.34

1.37

psbB

1.62

1.57

1.66

1.49

1.53

1.57

psbC

1.64

1.51

1.50

1.52

1.51

1.54

psbD

1.76

1.68

1.67

1.46

1.66

1.64

psbE

1.55

1.39

1.74

1.25

1.35

1.46

psbF

2.97

2.64

3.45

2.97

2.67

2.94

psbH

1.65

1.61

1.57

1.39

1.44

1.53

psbI

1.37

1.45

1.43

1.23

1.34

1.36

psbJ

2.17

2.05

2.14

1.78

1.86

2.00

psbK

1.54

1.30

1.35

1.25

1.29

1.34

psbL

1.31

0.97

1.08

1.19

1.03

1.12

psbM

1.33

1.07

1.36

1.02

0.99

1.15

psbN

1.78

1.32

1.50

1.29

1.33

1.45

psbT

1.25

1.39

1.75

0.94

1.16

1.30

psbZ

2.04

2.02

2.19

1.91

2.01

2.03

rbcL

1.48

1.42

1.61

1.32

1.36

1.44

rpl14

1.86

1.62

1.62

1.64

1.68

1.68

rpl16

2.14

2.27

2.28

2.02

2.09

2.16

rpl20

1.61

1.53

1.54

1.45

1.53

1.53

rpl33

2.02

2.39

2.32

2.43

2.46

2.32

rpl36

2.26

1.99

2.28

2.10

1.83

2.09

rpoA

2.15

2.27

2.40

1.93

2.03

2.15

rpoB

1.89

1.69

1.82

1.49

1.58

1.69

rpoC1

2.07

1.69

1.77

1.14

1.57

1.65

rpoC2

1.73

1.58

1.70

1.46

1.54

1.60

rps11

2.62

2.59

2.84

2.24

2.40

2.54

rps12

1.98

1.72

1.46

1.49

1.60

1.65

rps14

2.02

2.01

2.35

1.78

1.91

2.01

rps15

1.88

1.72

1.43

1.61

1.70

1.67

rps18

2.99

2.15

2.43

2.40

2.11

2.41

rps19

1.95

2.19

2.07

2.01

2.05

2.05

rps2

2.10

2.02

2.04

1.82

1.85

1.97

rps3

2.18

2.20

2.35

2.02

2.10

2.17

rps4

1.83

1.73

1.76

1.68

1.62

1.72

rps7

2.20

2.37

2.58

1.64

1.69

2.10

rps8

1.57

1.29

1.40

1.23

1.32

1.36

ycf3

1.95

1.53

1.54

1.69

1.63

1.67

ycf4

1.63

1.36

1.49

1.32

1.05

1.37


Relative divergence factor values indicated in bold are significantly different than 1 (two-tailed t-test. p < 0.05). Detailed information on each set of calculations can be found in Additional files 3, 4, 5, 6, 7.

McCoy et al. BMC Evolutionary Biology 2008 8:130   doi:10.1186/1471-2148-8-130

Open Data